View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14495_low_5 (Length: 530)
Name: NF14495_low_5
Description: NF14495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14495_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 39296724 - 39296229
Alignment:
| Q |
19 |
ctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacctgctttaac |
118 |
Q |
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| T |
39296724 |
ctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacctgctttaac |
39296625 |
T |
|
| Q |
119 |
accaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgagaattgtg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296624 |
accaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgagaattgtg |
39296525 |
T |
|
| Q |
219 |
atagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttacagttaaaagaatga |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |
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| T |
39296524 |
atagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaactaggctcacaacttactgttaaaagaatga |
39296425 |
T |
|
| Q |
319 |
aaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagagcga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
39296424 |
aaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagagcga |
39296325 |
T |
|
| Q |
419 |
agtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaacaagagaata |
514 |
Q |
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| T |
39296324 |
agtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaacgagagaata |
39296229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Complemental strand, 39289844 - 39289345
Alignment:
| Q |
19 |
ctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacctgctttaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39289844 |
ctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacctgctttaac |
39289745 |
T |
|
| Q |
119 |
accaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgagaattgtg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289744 |
accaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgagaattgtg |
39289645 |
T |
|
| Q |
219 |
atagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttacagttaaaagaatga |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| || ||||||| ||| | |||||||| |
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| T |
39289644 |
atagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgataggtttttgaactaggttcataacttatagtaagaagaatga |
39289545 |
T |
|
| Q |
319 |
aaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagagcga |
418 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||| ||||| |
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| T |
39289544 |
ataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaagcga |
39289445 |
T |
|
| Q |
419 |
agtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaagagaataa |
515 |
Q |
| |
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|| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| ||||||||||||| || ||||||||| |
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| T |
39289444 |
agagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataa |
39289345 |
T |
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