View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14496_low_2 (Length: 229)

Name: NF14496_low_2
Description: NF14496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14496_low_2
NF14496_low_2
[»] chr4 (2 HSPs)
chr4 (19-216)||(9336452-9336649)
chr4 (61-111)||(35131974-35132024)
[»] chr7 (20 HSPs)
chr7 (61-215)||(8666830-8666984)
chr7 (19-152)||(8671659-8671792)
chr7 (19-215)||(8653858-8654057)
chr7 (19-108)||(10494935-10495024)
chr7 (61-112)||(13333968-13334019)
chr7 (165-215)||(13334072-13334122)
chr7 (162-211)||(3146682-3146731)
chr7 (162-208)||(8586407-8586453)
chr7 (161-211)||(8646295-8646345)
chr7 (165-215)||(10495078-10495128)
chr7 (165-211)||(17259654-17259700)
chr7 (163-208)||(8616136-8616181)
chr7 (165-211)||(17267357-17267403)
chr7 (165-211)||(17275011-17275057)
chr7 (162-215)||(6788926-6788979)
chr7 (19-47)||(1301040-1301068)
chr7 (19-47)||(8658942-8658970)
chr7 (64-108)||(17259757-17259801)
chr7 (64-108)||(17267460-17267504)
chr7 (61-113)||(29582441-29582493)
[»] chr3 (1 HSPs)
chr3 (163-211)||(53416761-53416809)
[»] chr1 (3 HSPs)
chr1 (165-215)||(29465263-29465313)
chr1 (162-209)||(15594455-15594502)
chr1 (162-211)||(4679255-4679304)
[»] chr2 (5 HSPs)
chr2 (161-210)||(16658220-16658269)
chr2 (61-113)||(12259181-12259233)
chr2 (62-115)||(14702922-14702975)
chr2 (163-217)||(14702820-14702874)
chr2 (64-114)||(43624927-43624977)
[»] chr8 (1 HSPs)
chr8 (162-211)||(43744234-43744283)
[»] chr5 (1 HSPs)
chr5 (161-211)||(28219336-28219386)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 9336452 - 9336649
Alignment:
Q  19 atgttaccccattgtcacttggtatcgcaacatataaggaaaatatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagacaaatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336452 atgttaccccattgtcacttggtatcgcaacatataaggaaaatatcatgagtgtggtgattcctagaaacacttccatacctgtcaagaagacaaatgg 9336551  T
Q  119 atatttcaccctttatgataaccagtgcattgtcgattttcctgtttatgagggtgagagaccaagagctactgacaataatctgcttggttcatttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336552 atatttcaccctttatgataaccagtgcattgtcgattttcctgtttatgagggtgagagaccaagagctactgacaataatctgcttggttcatttc 9336649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 35132024 - 35131974
Alignment:
Q  61 atatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaaga 111  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  35132024 atatcatgaatgtggtgattcctaggaacacttgcattcctgtcaagaaga 35131974  T

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Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 8666984 - 8666830
Alignment:
Q  61 atatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagacaaatggatatttcaccctttatgataaccagtgcattgtcgattttcc 160  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| ||||||     
T  8666984 atatcatgagtgtggtgattcctagaaacacttccatacctgtcaagaagacaagtcgatattccaccctttatgataaccagtgccttgtcaattttct 8666885  T
Q  161 tgtttatgagggtgagagaccaagagctactgacaataatctgcttggttcattt 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8666884 tgtttatgagggtgagagaccaagagctgctgacaataatctgcttggttcattt 8666830  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 8671659 - 8671792
Alignment:
Q  19 atgttaccccattgtcacttggtatcgcaacatataaggaaaatatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagacaaatgg 118  Q
    ||||||| ||||||||||||||||| ||  ||   |  ||| ||||||||| |||||||||||| ||||||||||||||||||||||  ||||||||| |    
T  8671659 atgttacgccattgtcacttggtattgctgcaaggattgaacatatcatgagtgtggtgattccaagaaacacttccatacctgtcacaaagacaaatcg 8671758  T
Q  119 atatttcaccctttatgataaccagtgcattgtc 152  Q
    ||||  |||| | |||||||||||| ||||||||    
T  8671759 atataccaccttatatgataaccagcgcattgtc 8671792  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 8654057 - 8653858
Alignment:
Q  19 atgttaccccattgtcacttggtatcgcaaca------tataaggaaaatatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagac 112  Q
    ||||||||||||||||||||||||||||||||      |||  ||||||||||||| |||||||||||||||| ||||||||||| |||||||| || ||    
T  8654057 atgttaccccattgtcacttggtatcgcaacagcaacatattgggaaaatatcatggatgtggtgattcctaggaacacttccatccctgtcaaaaatac 8653958  T
Q  113 aaatggatatttcacc-ctttatgataaccagtgcattgtcgattttcctgtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
     || |||||||  ||  || || |||||    ||   || |  | ||  ||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  8653957 taaaggatattgtacagctata-gataat---tgtggtgcctctattattgtttatgagggtgagagaccaagagctagtgacaataatctgcttggttt 8653862  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 10494935 - 10495024
Alignment:
Q  19 atgttaccccattgtcacttggtatcgcaacatataaggaaaatatcatgaatgtggtgattcctagaaacacttccatacctgtcaaga 108  Q
    ||||||||||||||||||||||||| | |  |   || ||| |||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  10494935 atgttaccccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaaga 10495024  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 13333968 - 13334019
Alignment:
Q  61 atatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagac 112  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  13333968 atatcatgaatgttgtgattcctaggaacacttccatccctgtcaagaagac 13334019  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 13334072 - 13334122
Alignment:
Q  165 tatgagggtgagagaccaagagctactgacaataatctgcttggttcattt 215  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  13334072 tatgagggtgagagagcaagagctagtgacaataatctacttggttcattt 13334122  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 3146731 - 3146682
Alignment:
Q  162 gtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggttc 3146682  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 8586407 - 8586453
Alignment:
Q  162 gtttatgagggtgagagaccaagagctactgacaataatctgcttgg 208  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||    
T  8586407 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttgg 8586453  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 8646345 - 8646295
Alignment:
Q  161 tgtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    ||||||||||||||||||| ||||||| | |||||| ||||||||||||||    
T  8646345 tgtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttc 8646295  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 10495078 - 10495128
Alignment:
Q  165 tatgagggtgagagaccaagagctactgacaataatctgcttggttcattt 215  Q
    ||||||||||||||| ||||||||| ||| |||||||| ||||||||||||    
T  10495078 tatgagggtgagagagcaagagctagtgagaataatctacttggttcattt 10495128  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 17259700 - 17259654
Alignment:
Q  165 tatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  17259700 tatgagggtgagagaccaagagcaactgacaatcatcttcttggttc 17259654  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 8616181 - 8616136
Alignment:
Q  163 tttatgagggtgagagaccaagagctactgacaataatctgcttgg 208  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||    
T  8616181 tttatgagggtgagagatcaagagctagtgacaacaatctgcttgg 8616136  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 17267403 - 17267357
Alignment:
Q  165 tatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    ||||||||||||||||||||||| | ||||||| |||| ||||||||    
T  17267403 tatgagggtgagagaccaagagcaagtgacaatcatcttcttggttc 17267357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 17275057 - 17275011
Alignment:
Q  165 tatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    ||||||||||||||||||||||| | ||||||| |||| ||||||||    
T  17275057 tatgagggtgagagaccaagagcaagtgacaatcatcttcttggttc 17275011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 6788979 - 6788926
Alignment:
Q  162 gtttatgagggtgagagaccaagagctactgacaataatctgcttggttcattt 215  Q
    |||||||||||||| ||||||||||| | ||| || |||||||| |||||||||    
T  6788979 gtttatgagggtgaaagaccaagagccagtgataacaatctgctcggttcattt 6788926  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 1301068 - 1301040
Alignment:
Q  19 atgttaccccattgtcacttggtatcgca 47  Q
    |||||||||||||||||||||||||||||    
T  1301068 atgttaccccattgtcacttggtatcgca 1301040  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 8658970 - 8658942
Alignment:
Q  19 atgttaccccattgtcacttggtatcgca 47  Q
    |||||||||||||||||||||||||||||    
T  8658970 atgttaccccattgtcacttggtatcgca 8658942  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 17259801 - 17259757
Alignment:
Q  64 tcatgaatgtggtgattcctagaaacacttccatacctgtcaaga 108  Q
    |||||| ||||||||||||||| |||||||| || ||||||||||    
T  17259801 tcatgagtgtggtgattcctaggaacacttcaattcctgtcaaga 17259757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 17267504 - 17267460
Alignment:
Q  64 tcatgaatgtggtgattcctagaaacacttccatacctgtcaaga 108  Q
    |||||| ||||||||||||||| |||||||| || ||||||||||    
T  17267504 tcatgagtgtggtgattcctaggaacacttcaattcctgtcaaga 17267460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 29582441 - 29582493
Alignment:
Q  61 atatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagaca 113  Q
    ||||||||| ||||||||||||||| |||||| |||| |||| ||||| ||||    
T  29582441 atatcatgagtgtggtgattcctaggaacactcccattcctgccaagatgaca 29582493  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 53416761 - 53416809
Alignment:
Q  163 tttatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53416761 tttatgagggtgagagaccaagagctactgacaataatctgcttggttc 53416809  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 29465313 - 29465263
Alignment:
Q  165 tatgagggtgagagaccaagagctactgacaataatctgcttggttcattt 215  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  29465313 tatgagggtgagagagcaagagctagtgacaattatctgcttggttcattt 29465263  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 15594502 - 15594455
Alignment:
Q  162 gtttatgagggtgagagaccaagagctactgacaataatctgcttggt 209  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||||    
T  15594502 gtttatgagggtgagagagcaagagctagtgacaataatttgcttggt 15594455  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 4679255 - 4679304
Alignment:
Q  162 gtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    |||||||||||||||||| ||||||| || ||||| ||||||||||||||    
T  4679255 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 4679304  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 16658220 - 16658269
Alignment:
Q  161 tgtttatgagggtgagagaccaagagctactgacaataatctgcttggtt 210  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  16658220 tgtttatgagggtgagagagcaagagctgctgacaataatctgctcggtt 16658269  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 12259181 - 12259233
Alignment:
Q  61 atatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagaca 113  Q
    |||||||| |||||||||||||||| ||||||| ||| |||||||||||||||    
T  12259181 atatcatggatgtggtgattcctaggaacacttgcattcctgtcaagaagaca 12259233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 14702975 - 14702922
Alignment:
Q  62 tatcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagacaaa 115  Q
    ||||||| |||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  14702975 tatcatggatgtggtgattcctaggaacacttgcattcctgtcaaaaagacaaa 14702922  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 14702874 - 14702820
Alignment:
Q  163 tttatgagggtgagagaccaagagctactgacaataatctgcttggttcatttca 217  Q
    ||||||||||||||||| ||||||| | |||||||||| || ||||||| |||||    
T  14702874 tttatgagggtgagagaacaagagccagtgacaataatttgattggttcttttca 14702820  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 43624977 - 43624927
Alignment:
Q  64 tcatgaatgtggtgattcctagaaacacttccatacctgtcaagaagacaa 114  Q
    |||||| ||||||||||||||| || |||||  ||||||||||||||||||    
T  43624977 tcatgagtgtggtgattcctaggaatacttctgtacctgtcaagaagacaa 43624927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 43744283 - 43744234
Alignment:
Q  162 gtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    |||||||||||||||||| ||||||| | |||||| ||||||||||||||    
T  43744283 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttc 43744234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 28219386 - 28219336
Alignment:
Q  161 tgtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 211  Q
    ||||||||||||||||||| ||| ||| | |||||| ||||||||||||||    
T  28219386 tgtttatgagggtgagagagcaaaagcaagtgacaacaatctgcttggttc 28219336  T

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