View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14497_high_1 (Length: 640)

Name: NF14497_high_1
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14497_high_1
NF14497_high_1
[»] chr1 (4 HSPs)
chr1 (22-618)||(24606570-24607181)
chr1 (214-265)||(6128011-6128062)
chr1 (214-267)||(9570644-9570696)
chr1 (221-265)||(4824978-4825022)
[»] chr3 (3 HSPs)
chr3 (214-251)||(14270564-14270601)
chr3 (214-304)||(8027715-8027805)
chr3 (224-264)||(40372152-40372192)
[»] chr5 (1 HSPs)
chr5 (213-255)||(31669059-31669101)
[»] scaffold0016 (1 HSPs)
scaffold0016 (212-265)||(77618-77671)
[»] chr8 (2 HSPs)
chr8 (221-250)||(31632430-31632459)
chr8 (221-265)||(9938001-9938045)
[»] chr4 (3 HSPs)
chr4 (214-255)||(6606058-6606099)
chr4 (214-258)||(10538806-10538850)
chr4 (213-265)||(44865333-44865385)
[»] scaffold0197 (1 HSPs)
scaffold0197 (210-254)||(11550-11594)
[»] chr2 (1 HSPs)
chr2 (213-265)||(41908663-41908715)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 22 - 618
Target Start/End: Original strand, 24606570 - 24607181
Alignment:
Q  22 ctcgtgagcttctacttgccatgaaaagtgcgatgaaaattgacaacctagtgtctatcagccaaataccatacaacttagaaggaagttttccatacta 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  24606570 ctcgtgagcttctacttgccatgaaaagtgcgatgaaaattgacaacctagtgtctatcagccaaataccatgcaacttagaaggaagttttctatacta 24606669  T
Q  122 taaaaatatacagtaatat--gtaaggatttgacagcaatttctcaccaattcagataagaaacgcataattcgcatcatttatggatcggaataaccca 219  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  24606670 taaaaatatacagtaatatatgtaaggatttgacagcaatttctcaccaattcagataagaaacggataattcgtatcatttatggatcggaataaccca 24606769  T
Q  220 attgggttggtctgatggtgttggtttgagaccttgaagcgtgctcttttaaacgtattcgattcttccagatgccattttcggtgggttaggttgactt 319  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  24606770 attgggttggtttgatggtgttagtttgagaccttgaagcatgcccttttaaacgtatccgattcttcctgatgccattttcggtgggttaggttgactt 24606869  T
Q  320 tttcaagaaaaaagagttatcccatgcatggtgcttgtgcgtgcatgcttgatcttttccatataaaatgcaaggctcattgtcatagcttga------- 412  Q
    |||||||  |||||||||||||||||||||||||||    |||||||||||| |||||||||| |||||||||||||||||||||||||| ||           
T  24606870 tttcaag--aaaagagttatcccatgcatggtgctt----gtgcatgcttgaccttttccataaaaaatgcaaggctcattgtcatagctagaggcatac 24606963  T
Q  413 -------aacat--caacaattgtggtagaaaaaggaaacaatgccattatttccatagactcaatacgagaaaca---cctaaataactcaaacgagga 500  Q
           |||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  24606964 cttttagaacataacaacaattgtggtagaaaaatgaaacaatgccattatttccatagactcaatacgagaaacaccccctaaataactcaaacgagga 24607063  T
Q  501 acctcatctggttcacgtgctagattaagtatttaatgtaggatattgtcaaactcaaccaaacccacaataaaaccatgcttttcaatggaattagctt 600  Q
    ||||||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||    
T  24607064 acctcatatggttcacgtgctagattaagtatttgatgttggatattgttaagctcaaccaaagtcacaataaaaccatgcttttcaatggaattagctt 24607163  T
Q  601 gcatttgtaaggactgat 618  Q
    ||||||||||||||||||    
T  24607164 gcatttgtaaggactgat 24607181  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 6128062 - 6128011
Alignment:
Q  214 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 265  Q
    ||||||| || ||||||||| ||||||||||||| ||||||| |||||||||    
T  6128062 aacccaaatgtgttggtctggtggtgttggtttgggaccttggagcgtgctc 6128011  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 9570644 - 9570696
Alignment:
Q  214 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctctt 267  Q
    |||||| ||||||||| ||||||||||||| ||||||||||| || ||||||||    
T  9570644 aacccacttgggttgg-ctgatggtgttggcttgagaccttggagtgtgctctt 9570696  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 4824978 - 4825022
Alignment:
Q  221 ttgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 265  Q
    ||||||||||||||||||||||| ||| ||||||| || ||||||    
T  4824978 ttgggttggtctgatggtgttggcttgggaccttggagtgtgctc 4825022  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 14270601 - 14270564
Alignment:
Q  214 aacccaattgggttggtctgatggtgttggtttgagac 251  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14270601 aacccaattgggttggcctgatggtgttggtttgagac 14270564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 8027805 - 8027715
Alignment:
Q  214 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctcttttaaacgtattcgattcttccagatgccattttcggt 304  Q
    |||||| |||||||||| |||||||||||||||  |||||||||  |||||| |||   | ||||||||||||| | ||| || |||||||    
T  8027805 aacccacttgggttggtttgatggtgttggtttaggaccttgaaatgtgctccttttctcatattcgattcttctaaatgtcaatttcggt 8027715  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 40372152 - 40372192
Alignment:
Q  224 ggttggtctgatggtgttggtttgagaccttgaagcgtgct 264  Q
    ||||||||||||||| |||||||| |||||||||| |||||    
T  40372152 ggttggtctgatggtattggtttgggaccttgaagggtgct 40372192  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 31669101 - 31669059
Alignment:
Q  213 taacccaattgggttggtctgatggtgttggtttgagaccttg 255  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  31669101 taacccacttgggttggtctgatggtgttggcttgggaccttg 31669059  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 77618 - 77671
Alignment:
Q  212 ataacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 265  Q
    |||||||| |||| |||||||||||||||||||||| ||| ||| || ||||||    
T  77618 ataacccacttggattggtctgatggtgttggtttgggactttggagtgtgctc 77671  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 250
Target Start/End: Complemental strand, 31632459 - 31632430
Alignment:
Q  221 ttgggttggtctgatggtgttggtttgaga 250  Q
    ||||||||||||||||||||||||||||||    
T  31632459 ttgggttggtctgatggtgttggtttgaga 31632430  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 9938045 - 9938001
Alignment:
Q  221 ttgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 265  Q
    |||||||||||| ||||| |||||||| |||||||||| ||||||    
T  9938045 ttgggttggtctaatggtattggtttgggaccttgaagtgtgctc 9938001  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 6606058 - 6606099
Alignment:
Q  214 aacccaattgggttggtctgatggtgttggtttgagaccttg 255  Q
    |||||| ||||||||||||||||||||||| ||| |||||||    
T  6606058 aacccacttgggttggtctgatggtgttggcttgggaccttg 6606099  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 10538806 - 10538850
Alignment:
Q  214 aacccaattgggttggtctgatggtgttggtttgagaccttgaag 258  Q
    |||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  10538806 aacccacttgagttggtctggtggtgttggcttgagaccttgaag 10538850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 44865333 - 44865385
Alignment:
Q  213 taacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 265  Q
    ||||||| ||||||||| ||||||||||||| ||||| |||||| | ||||||    
T  44865333 taacccacttgggttggcctgatggtgttggcttgagtccttgatgtgtgctc 44865385  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 11594 - 11550
Alignment:
Q  210 gaataacccaattgggttggtctgatggtgttggtttgagacctt 254  Q
    |||||||||||||||||||||||||| | ||||  ||||||||||    
T  11594 gaataacccaattgggttggtctgatagcgttgacttgagacctt 11550  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 41908715 - 41908663
Alignment:
Q  213 taacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 265  Q
    ||||||| ||||||||| ||| |||||| |||||||||||||| || ||||||    
T  41908715 taacccacttgggttggcctggtggtgtcggtttgagaccttggagtgtgctc 41908663  T

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