View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14497_high_14 (Length: 306)

Name: NF14497_high_14
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14497_high_14
NF14497_high_14
[»] chr8 (1 HSPs)
chr8 (16-306)||(41966952-41967242)
[»] chr2 (37 HSPs)
chr2 (16-303)||(9364239-9364523)
chr2 (16-108)||(9291560-9291652)
chr2 (215-306)||(9061403-9061494)
chr2 (16-126)||(12012947-12013057)
chr2 (230-306)||(12012793-12012869)
chr2 (227-306)||(9291741-9291820)
chr2 (239-306)||(12019132-12019199)
chr2 (230-306)||(9284434-9284510)
chr2 (227-306)||(8573770-8573849)
chr2 (227-306)||(9315838-9315917)
chr2 (16-126)||(11987885-11987995)
chr2 (230-302)||(11987735-11987807)
chr2 (56-188)||(9294990-9295125)
chr2 (223-306)||(9320797-9320880)
chr2 (16-126)||(9315641-9315751)
chr2 (16-98)||(10352732-10352814)
chr2 (230-306)||(9328421-9328497)
chr2 (60-188)||(9284540-9284671)
chr2 (227-302)||(12006366-12006441)
chr2 (56-118)||(9061584-9061646)
chr2 (57-192)||(10371502-10371636)
chr2 (16-126)||(12019287-12019394)
chr2 (215-274)||(9065890-9065949)
chr2 (231-306)||(10335679-10335754)
chr2 (231-278)||(10347584-10347631)
chr2 (16-126)||(9320593-9320703)
chr2 (231-300)||(10352932-10353001)
chr2 (236-306)||(10341177-10341247)
chr2 (16-121)||(8573931-8574038)
chr2 (227-274)||(7115945-7115992)
chr2 (16-83)||(9066074-9066141)
chr2 (64-126)||(9328260-9328322)
chr2 (21-190)||(10347400-10347561)
chr2 (16-74)||(12006543-12006601)
chr2 (36-104)||(9274204-9274272)
chr2 (230-274)||(9274322-9274366)
chr2 (250-306)||(10371679-10371735)
[»] chr1 (7 HSPs)
chr1 (22-192)||(29453629-29453799)
chr1 (240-306)||(29468024-29468090)
chr1 (240-304)||(29423097-29423161)
chr1 (241-306)||(29453548-29453613)
chr1 (66-191)||(29443647-29443774)
chr1 (16-126)||(29422935-29423044)
chr1 (39-84)||(29468228-29468273)
[»] chr4 (1 HSPs)
chr4 (16-98)||(26574518-26574600)
[»] chr3 (1 HSPs)
chr3 (16-132)||(37462092-37462209)
[»] scaffold0667 (2 HSPs)
scaffold0667 (230-274)||(4275-4319)
scaffold0667 (16-126)||(4067-4177)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 41967242 - 41966952
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41967242 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 41967143  T
Q  116 tgggtccattgcactaatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttgtagtctgacatctcagcttacatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41967142 tgggtccattgcactaatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttgtagtctgacatctcagcttacatag 41967043  T
Q  216 attctcgttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41967042 attctccttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 41966952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 9364239 - 9364523
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| || |||| ||||||||||||| |  || ||||||||||||||||| |||| |||||||| ||||||||||||||||| |||  |||||    
T  9364239 aaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatga 9364338  T
Q  116 tgggtccattgcactaatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttgtagtctgacatctcagcttacatag 215  Q
    ||||| ||||| ||  || || | |||||| ||||||  || |||||   ||||| |||||||||||||||||| || | | ||||||||  ||   ||     
T  9364339 tgggttcattgaacggatatagcttatacacagcaaagactcagata---aacaacaagtaccttctcttgcttatactttcacatctcaatttgtgtaa 9364435  T
Q  216 attctcgttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattcct 303  Q
    |||||| ||| |||||||| ||||||| || ||||||||||||||||| |||||||||| ||| |||||||  | |||||||||||||    
T  9364436 attctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcct 9364523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 9291560 - 9291652
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtat 108  Q
    ||||||||||| || |||| |||||||||||||||  || |||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  9291560 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttaacctttagcatagagtttaactacatgtat 9291652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 9061494 - 9061403
Alignment:
Q  215 gattctcgttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    ||||||| ||||||||| || ||||||||||| |||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  9061494 gattctccttcttacaagtatcaacagggaagaaaggtgatacgagacttccaacataaaacatagcttcatcaaaattaggaattccttca 9061403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 12013057 - 12012947
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| || |||| |||||||||||||||  || |||||||||||||||||||||| ||||||||||| |||| ||| ||||| |||  |||||    
T  12013057 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacctttaacatggagtctaactacatatatcatatga 12012958  T
Q  116 tgggtccattg 126  Q
    |||||||||||    
T  12012957 tgggtccattg 12012947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 12012869 - 12012793
Alignment:
Q  230 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  12012869 aattatcaacagggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttca 12012793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 9291741 - 9291820
Alignment:
Q  227 tacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| ||||||||||||||||||    
T  9291741 tacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttca 9291820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 12019199 - 12019132
Alignment:
Q  239 cagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  12019199 caggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttca 12019132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 9284510 - 9284434
Alignment:
Q  230 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||| ||| |||||||| ||||||||||||||||||    
T  9284510 aattatcaacagggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttca 9284434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 8573849 - 8573770
Alignment:
Q  227 tacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |||   |||||||||||||||||    
T  8573849 tacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaattccttca 8573770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 9315838 - 9315917
Alignment:
Q  227 tacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||| ||||||||||    
T  9315838 tacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttca 9315917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 11987995 - 11987885
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| || |||| ||||||||||| |||  || |||||||||| ||||||||||| |||||||||||| ||||||| ||||| |||   ||||    
T  11987995 aaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatatatcacatga 11987896  T
Q  116 tgggtccattg 126  Q
    |||||||||||    
T  11987895 tgggtccattg 11987885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 11987807 - 11987735
Alignment:
Q  230 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattcc 302  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || |||||||||||    
T  11987807 aattatcaacagggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattcc 11987735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 9295125 - 9294990
Alignment:
Q  56 tcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtccattgcact-aatctaacatatacaaagc-aaaa 153  Q
    |||||||||||||||||||||| ||||||| ||||||||||||  ||||  ||| |||||||||||||||  ||| ||  |||| |||||||||| ||||    
T  9295125 tcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa 9295026  T
Q  154 gctaagataatgaa-caagaagtaccttctcttgct 188  Q
     || ||||||| ||  ||||||||||||||||||||    
T  9295025 actcagataatcaataaagaagtaccttctcttgct 9294990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 9320797 - 9320880
Alignment:
Q  223 ttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||  || |||  |||| |||||||||||||    
T  9320797 ttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttca 9320880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 9315641 - 9315751
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| ||  ||  |||||||||| ||||  || |||||||||||||||||||||| ||||||| |||||||||||| ||| | |||  |||||    
T  9315641 aaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatatga 9315740  T
Q  116 tgggtccattg 126  Q
    |||||||||||    
T  9315741 tgggtccattg 9315751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 10352732 - 10352814
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaa 98  Q
    |||||||||||||| | || |||||||||||||||  ||||||||| ||||||||||||||| |||| ||| |||||||||||    
T  10352732 aaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacctataatatagagtttaa 10352814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 9328421 - 9328497
Alignment:
Q  230 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||  | ||||  |||| |||||||||||||    
T  9328421 aattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttca 9328497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 9284671 - 9284540
Alignment:
Q  60 ataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtccattgcact-aatctaacatatacaaagc-aaaagcta 157  Q
    |||||||||||||||||| |||||||| ||| ||||||| |||||  ||| |||||||||||||||  ||| ||  |||| |||||||||| |||| ||     
T  9284671 ataataagaattcaatttgacctttaatataaagtttaactacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactc 9284572  T
Q  158 agataatgaa-caagaagtaccttctcttgct 188  Q
    ||||||| ||  ||||||||||||||||||||    
T  9284571 agataatcaataaagaagtaccttctcttgct 9284540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 12006441 - 12006366
Alignment:
Q  227 tacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattcc 302  Q
    |||||||  ||||||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||||||    
T  12006441 tacaattctcaacagggaaggaaggcagtacaagacttccaacacaaatcatcgcttcatcgaaatttggaattcc 12006366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 9061646 - 9061584
Alignment:
Q  56 tcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgg 118  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||    
T  9061646 tcctataacaagaattcaatttaacctttagcatagagtttaactacatatattatatgatgg 9061584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 10371502 - 10371636
Alignment:
Q  57 cctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtccattgcactaat-ctaacatatacaaagcaaaagc 155  Q
    ||||| ||||||||||||||| |||||||||| ||||||||| | ||| |||  |||||||| ||||||| ||| ||  |||| |||||| | ||||| |    
T  10371502 cctatgataagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaac 10371601  T
Q  156 taagataatgaacaagaagtaccttctcttgcttgta 192  Q
    | || |||  ||||| |||||||||||||||||||||    
T  10371602 tcagttaa--aacaataagtaccttctcttgcttgta 10371636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 12019394 - 12019287
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| || |||| |||||||||||||||  || ||||||||||||||||| |   |  | |||||||||||||||| ||||| |||  |||||    
T  12019394 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcca---atacattaacatagagtttaactacatatatcatatga 12019298  T
Q  116 tgggtccattg 126  Q
    |||||||||||    
T  12019297 tgggtccattg 12019287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 9065949 - 9065890
Alignment:
Q  215 gattctcgttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaa 274  Q
    ||||||| ||| |||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  9065949 gattctccttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaa 9065890  T

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Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 10335679 - 10335754
Alignment:
Q  231 attaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||| ||||||| ||||||||||  ||||||||||||||||||| ||| |  ||||| ||||||||||||||||||    
T  10335679 attatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaattccttca 10335754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 10347584 - 10347631
Alignment:
Q  231 attaacaacagggaaggaaggtggtacaagacttccaacacaaaacat 278  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10347584 attatcaacagggaaggaaggtgggacaagacttccaacacaaaacat 10347631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 9320593 - 9320703
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| || |||| |||||||||||| ||  || ||| ||||||| |||||||||| |||| || |||||||||||| |  || |||  |||||    
T  9320593 aaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacctatagcatagagtttaacttaatatatcatatga 9320692  T
Q  116 tgggtccattg 126  Q
    |||||||||||    
T  9320693 tgggtccattg 9320703  T

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Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 10352932 - 10353001
Alignment:
Q  231 attaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaatt 300  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| ||| |  ||||| |||||| |||||    
T  10352932 attatcaacagggaagtaaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatt 10353001  T

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Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 10341177 - 10341247
Alignment:
Q  236 caacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    ||||||||||| |||||||||| | |||||||||||| | ||| || ||||| |||| |||||||||||||    
T  10341177 caacagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaattccttca 10341247  T

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Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 8574038 - 8573931
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctata--ataagaattcaatttaacctttaacatagagtttaagtacatgtattgtat 113  Q
    ||||||||||| |  |||| |||||||||||||||  || ||||||   ||||||||| ||||| ||||||| ||||||||||||  |||| |||  |||    
T  8574038 aaacaaaggtataaacttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacctttagcatagagtttaaccacatatatcatat 8573939  T
Q  114 gatgggtc 121  Q
    ||||||||    
T  8573938 gatgggtc 8573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 7115992 - 7115945
Alignment:
Q  227 tacaattaacaacagggaaggaaggtggtacaagacttccaacacaaa 274  Q
    |||||||| ||||||||||||||||||||||||| ||| ||| |||||    
T  7115992 tacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaa 7115945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 9066141 - 9066074
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctt 83  Q
    ||||||||||| |  |||| |||||||||||||||  ||||||||| |||||| |||||||| |||||    
T  9066141 aaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaatttgacctt 9066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 9328260 - 9328322
Alignment:
Q  64 taagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtccattg 126  Q
    |||||||||||||| ||||||| |||||||||||| | ||| |||  ||||| ||||||||||    
T  9328260 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattg 9328322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 10347400 - 10347561
Alignment:
Q  21 aaggtaaagccttcgaagtaattagagaatagt-tatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatggg 119  Q
    ||||||||| |||| ||||||||||| |||| | |||||||| |||||||||||||||          ||||||||||| | ||| |||  ||||||  |    
T  10347400 aaggtaaagacttcaaagtaattagaaaatactctatcctatgataagaattcaattt---------gatagagtttaactgcatatatgatatgataag 10347490  T
Q  120 tccattgcactaatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttg 190  Q
    ||||||| ||| || |||| |||||| | ||||| || || |||  || ||||||||||||||||||||||    
T  10347491 tccattgaactgatataacttatacacaacaaaaactcagttaaacaataagaagtaccttctcttgcttg 10347561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 12006601 - 12006543
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaa 74  Q
    ||||||||||| || |||| |||||||||||||||  || ||||| |||||||||||||    
T  12006601 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaa 12006543  T

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Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 9274204 - 9274272
Alignment:
Q  36 aagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacat 104  Q
    |||||||||| ||||  || |||||||||||||||||||  | ||||||| |||| ||||||| |||||    
T  9274204 aagtaattagtgaatccttgtcctataataagaattcaacatgacctttagcataaagtttaactacat 9274272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 9274322 - 9274366
Alignment:
Q  230 aattaacaacagggaaggaaggtggtacaagacttccaacacaaa 274  Q
    ||||| ||||||||||||| |||||||||| ||||||||| ||||    
T  9274322 aattatcaacagggaaggagggtggtacaaaacttccaacccaaa 9274366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 10371679 - 10371735
Alignment:
Q  250 ggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||||||||||||| |||||||||| ||| || ||||| ||||||| | ||||||||    
T  10371679 ggtggtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttca 10371735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 29453799 - 29453629
Alignment:
Q  22 aggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtc 121  Q
    ||||| || |||| |||||||||||||||  || | ||||||||||||||||||||| | ||||||||| ||||||| | ||| |||  |||||||| ||    
T  29453799 aggtagagacttcaaagtaattagagaatccttgttctataataagaattcaattta-cttttaacataaagtttaactgcatatatcatatgatggatc 29453701  T
Q  122 cattgcact-aatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttgta 192  Q
     |||| ||| ||  |||| |||||| ||||||| || ||||||| || ||| ||||||||||||||||||||    
T  29453700 tattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgta 29453629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 29468090 - 29468024
Alignment:
Q  240 agggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||    
T  29468090 agggaaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttca 29468024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 29423097 - 29423161
Alignment:
Q  240 agggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattcctt 304  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  29423097 agggaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattcctt 29423161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 29453613 - 29453548
Alignment:
Q  241 gggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttca 306  Q
    |||||||||||||| ||||||||||||||||||| ||| |||| ||| ||||||||||||||||||    
T  29453613 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttca 29453548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 29443774 - 29443647
Alignment:
Q  66 agaattcaatttaaccttt-aacatagagtttaagtacatgtattgtatgatgggtccattgcactaatct-aacatatacaaagcaaaagctaagataa 163  Q
    |||||||||||| |||||| ||||| |||||||| || || |||  |||||||||||||||| | | || | ||| ||||||||| |||| || || |||    
T  29443774 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaa 29443675  T
Q  164 tgaacaagaagtaccttctcttgcttgt 191  Q
    | || |||||||||||||||||||||||    
T  29443674 tcaataagaagtaccttctcttgcttgt 29443647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 29422935 - 29423044
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| || |||| || ||||||||||||  || || ||||||||||||||||||| |||||| | | ||||||||| || || |||  |||||    
T  29422935 aaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaatttgacctttta-acagagtttaactagatatatcatatga 29423033  T
Q  116 tgggtccattg 126  Q
    | |||||||||    
T  29423034 tcggtccattg 29423044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 29468273 - 29468228
Alignment:
Q  39 taattagagaatagttatcctataataagaattcaatttaaccttt 84  Q
    ||||||||||||  || |||||||||||||||||||||| ||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaatttgaccttt 29468228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 26574518 - 26574600
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaa 98  Q
    |||||| ||||||| | || |||||||||||||||  ||||||||| ||||||||||||||| |||| ||| |||||||||||    
T  26574518 aaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacctataatatagagtttaa 26574600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 37462092 - 37462209
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacc-tttaacatagagtttaagtacatgtattgtatg 114  Q
    ||||||||||| || |||| |||||||||||||||  || |||||||| ||||||||||||| ||| |||| ||||||  |||| ||||| |||  ||||    
T  37462092 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatg 37462191  T
Q  115 atgggtccattgcactaa 132  Q
    ||||||||| || |||||    
T  37462192 atgggtccaatgaactaa 37462209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 4275 - 4319
Alignment:
Q  230 aattaacaacagggaaggaaggtggtacaagacttccaacacaaa 274  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||    
T  4275 aattatcaacaggaaaggaaggtggtacaagacttccaacacaaa 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 4067 - 4177
Alignment:
Q  16 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 115  Q
    ||||||||||| ||  ||| ||||||||| |||||  || |||||||||||||||||||||| |  |||| || ||||||||| || ||  ||  |||||    
T  4067 aaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaatttgagttttagcacagagtttaactaaataaatcatatga 4166  T
Q  116 tgggtccattg 126  Q
    |||||||||||    
T  4167 tgggtccattg 4177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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