View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_high_19 (Length: 251)
Name: NF14497_high_19
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 20282974 - 20283195
Alignment:
| Q |
16 |
atgaacaatcagtaaaaacacacattaagcataagaaaaaactcaacgtaagttgtgatagcaaaatagcataattttaacctttcaagaacaaactttc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282974 |
atgaacaatcagtaaaaacacacattaagcataagaaaaaactcaacttaagttgtgatagcaaaatagcataattttaacctttcaagaacaaactttc |
20283073 |
T |
|
| Q |
116 |
cctctttgtacttctggcttttctcctgcacagtttcctatgagagagatgcaattttagaaggatcaaaagaactagatgcacaatgatgatcaaatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20283074 |
cctctttgtacttctggcttttctcctgcacagtttcctatgagagagatgcaattttagaaggatcaaaagaactagatgcacaatgatgatcaaatag |
20283173 |
T |
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| Q |
216 |
atttcacctacaacactagttt |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
20283174 |
atttcacctacaacactagttt |
20283195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 21069602 - 21069823
Alignment:
| Q |
16 |
atgaacaatcagtaaaaacacacattaagcataagaaaaaactcaacgtaagttgtgatagcaaaatagcataattttaacctttcaagaacaaactttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21069602 |
atgaacaatcagtaaaaacacacattaagcataagaaaaaactcaacttaagttgtgatagcaaaatagcataattttaacctttcaagaacaaactttc |
21069701 |
T |
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| Q |
116 |
cctctttgtacttctggcttttctcctgcacagtttcctatgagagagatgcaattttagaaggatcaaaagaactagatgcacaatgatgatcaaatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21069702 |
cctctttgtacttctggcttttctcctgcacagtttcctatgagagagatgcaattttagaaggatcaaaagaactagatgcacaatgatgatcaaatag |
21069801 |
T |
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| Q |
216 |
atttcacctacaacactagttt |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
21069802 |
atttcacctacaacactagttt |
21069823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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