View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_high_2 (Length: 610)
Name: NF14497_high_2
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 16 - 600
Target Start/End: Original strand, 38923194 - 38923778
Alignment:
| Q |
16 |
cctttgccaacagaagcagtgaccctattgaattccagcactcccatatccccatctccctccatctcatcacctccaccgaaaagagaaccatttctcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38923194 |
cctttgccaacagaagcagtgaccctattgaattccagcactcccatatccccatctccctccatctcatcacctccaccgaaaagagaaccatttctcg |
38923293 |
T |
|
| Q |
116 |
agttggttggcatgctatagcctcgaggcagagattgaaacaattccctgagagctggaggctgtggaggaaggttcaaaggatatagaggatcatacaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38923294 |
agttggttggcatgctatagcctcgaggcagagattgaaacaattccctgagagctggaggctgtggaggaagattcaaaggatatagaggatcatacaa |
38923393 |
T |
|
| Q |
216 |
aaccgatgatccgtttgtgttgtctgatgatcctattggaaggtctccaagaaaagtcattgaattatgaaaattgggtggattttgagttgggtttgtc |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38923394 |
aaccgatgatccgcttgtgttgtctgatgatcctattggaaggtctccaagaaaagtcattgaattatgaaaattgggtggattttgagttgggtttgtc |
38923493 |
T |
|
| Q |
316 |
atgcaaatgggggatgaatttgtgagcaaagatgaggagcatctaggtaagttgagaaggttaaggacatccggtgaagggtaatgagggtctagaatgg |
415 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38923494 |
atgcaaatggtggatgaatttgtgagcaaagatgaagagcatctaggtaagttgagaaggttaaggacatccggtgaagggtaatgagggtctagaatgg |
38923593 |
T |
|
| Q |
416 |
tcgagggattgtagttttggttatggttttgcgcctcgataaattgttgatattgttgttcagatagttggcggtgttcttggtgatggacataatccat |
515 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38923594 |
tcgagggattgtagctttggttatggttttgcgcctcgataaattgttgatattgttgttcagatagttggcggtgttcttggtgattgacataatccat |
38923693 |
T |
|
| Q |
516 |
atcctgaacactagggtcccaactcgagttctgatacacttcttgtaccaaatggttatccatgttgttgtaggtagtccctatg |
600 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38923694 |
atcctgaacactagggtcccaagtcgagttctgatacacttcttgtaccaaatggttatccatgttgttgtaggtattccctatg |
38923778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 38909610 - 38910034
Alignment:
| Q |
16 |
cctttgccaacagaagcagtgaccctattgaattccagcactcccatatccccatctccctccatctcatcacctccaccgaaaagagaaccatttctcg |
115 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||| | |||||||||| | |||||||||||||||||||| |||||||| ||| ||||||||||||| | |
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| T |
38909610 |
cctttgccaacaaaagcagtgaccttgttgaattgcgacactcccatacctccatctccctccatctcatcccctccaccaaaaggagaaccatttcttg |
38909709 |
T |
|
| Q |
116 |
agttggttggcatgctatagcctcgaggcagagattgaaacaattccctgagagctggaggctgtggaggaaggttcaaaggatatagaggatcatacaa |
215 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||||||| |||||| || || || |||| ||||| |||||||||||||||| ||||||||||||| || |
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| T |
38909710 |
agttggttggcatgctatagacgcgagggagagattgaggcaattctctaagggccggagactgtgcaggaaggttcaaaggaaatagaggatcatataa |
38909809 |
T |
|
| Q |
216 |
aaccgatgatccgtttgtgttgtctgatgatcctattggaaggtctccaagaaaagtcattgaattatgaaaattgggtggattttgagttgggtttgtc |
315 |
Q |
| |
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||| |||||||| ||| |||||| ||| |||||||||||||||||||||||| ||||||| | ||| ||||| ||||| ||||||||||||||||| |
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| T |
38909810 |
aactgatgatccacttgagttgtc---tgagcctattggaaggtctccaagaaaactcattgagtaatggaaattaggtggcttttgagttgggtttgtg |
38909906 |
T |
|
| Q |
316 |
atgcaaatgggggatgaatttgtgagcaaagatga---ggagcatctaggtaagttgagaaggttaaggacatccggtgaagggtaatgagggtctagaa |
412 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||| ||| ||||||| |||| |||| || || ||||| |||||||| ||||||||| || || |
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| T |
38909907 |
atgcaaatggtggatggatttgtgagcaaagatgaagctgaggatctaggaaagt---gaagatttagtacatctggtgaaggataatgaggggcttgag |
38910003 |
T |
|
| Q |
413 |
tggtcgagggattgtagttttggttatggtt |
443 |
Q |
| |
|
|||| |||||||||||| |||| |||||||| |
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| T |
38910004 |
tggttgagggattgtagctttgtttatggtt |
38910034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 480 - 588
Target Start/End: Original strand, 38910038 - 38910146
Alignment:
| Q |
480 |
tagttggcggtgttcttggtgatggacataatccatatcctgaacactagggtcccaactcgagttctgatacacttcttgtaccaaatggttatccatg |
579 |
Q |
| |
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||||||| ||| ||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
38910038 |
tagttggtggtattcttggtgattggcatagtccatatcctgagcactagggtcccaactcgagttctgatacacctcttgctccaaaaggttatccatg |
38910137 |
T |
|
| Q |
580 |
ttgttgtag |
588 |
Q |
| |
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||||||||| |
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| T |
38910138 |
ttgttgtag |
38910146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 24802449 - 24802344
Alignment:
| Q |
148 |
gattgaaacaattccctgagagctggaggctgtggaggaaggttcaaaggatatagaggatcatacaaaaccgatgatccgtttgtgttgtctgatgatc |
247 |
Q |
| |
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||||||||| |||||| ||||||||||| |||||| ||| |||||| ||| |||||||||||||||||| |||||||||| ||||||||| ||| | || |
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| T |
24802449 |
gattgaaacggttccctaagagctggaggttgtggacgaaagttcaa-ggaaatagaggatcatacaaaaacgatgatccgcttgtgttgtatgaagctc |
24802351 |
T |
|
| Q |
248 |
ctattgg |
254 |
Q |
| |
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||||||| |
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| T |
24802350 |
ctattgg |
24802344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 24802534 - 24802492
Alignment:
| Q |
16 |
cctttgccaacagaagcagtgaccctattgaattccagcactc |
58 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24802534 |
cctttgccaacagaagcagtgaccctgttgaattccagcactc |
24802492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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