View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14497_high_8 (Length: 512)

Name: NF14497_high_8
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14497_high_8
NF14497_high_8
[»] chr2 (3 HSPs)
chr2 (181-496)||(1033728-1034041)
chr2 (42-137)||(1033580-1033675)
chr2 (145-187)||(1033664-1033706)
[»] chr6 (3 HSPs)
chr6 (181-496)||(34831396-34831710)
chr6 (42-123)||(34834235-34834315)
chr6 (153-187)||(34831732-34831766)
[»] chr7 (5 HSPs)
chr7 (181-496)||(127875-128189)
chr7 (42-148)||(127686-127792)
chr7 (371-496)||(17930745-17930869)
chr7 (299-352)||(17931036-17931089)
chr7 (155-187)||(127821-127853)
[»] chr1 (2 HSPs)
chr1 (181-496)||(41365364-41365687)
chr1 (71-187)||(41365226-41365342)
[»] chr4 (1 HSPs)
chr4 (285-451)||(46638137-46638303)
[»] chr3 (1 HSPs)
chr3 (285-442)||(34939597-34939754)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 181 - 496
Target Start/End: Original strand, 1033728 - 1034041
Alignment:
Q  181 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033728 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 1033827  T
Q  281 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 380  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033828 atcgaacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 1033927  T
Q  381 ggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcaggctcatgttgttgttgt 480  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||| ||| |||||||||||||    
T  1033928 ggggtgtttgttttttatgctttcgatggtgaatgttattgagataagattgtggatgttgacttgtgggagtaaatctgca-gct-atgttgttgttgt 1034025  T
Q  481 tatggctattcttgtt 496  Q
    ||||||||||||||||    
T  1034026 tatggctattcttgtt 1034041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 1033580 - 1033675
Alignment:
Q  42 tgtgattcatggaaagaagaaacgatcactgagaaataaataatcatggaaaaattcagaaacccatagattgaaaagataacaaaaaacaagatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1033580 tgtgattcatggaaagaagaaacgatcactgagaaataaataatcatggaaaaattcagaaacccatagattgaaaagataacagaaaacaagatg 1033675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 1033664 - 1033706
Alignment:
Q  145 gaaaacaagatgcaataacctagcctcaaaatccaattcaatc 187  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  1033664 gaaaacaagatgcaataacctagcctcaaaatccaatccaatc 1033706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 181 - 496
Target Start/End: Complemental strand, 34831710 - 34831396
Alignment:
Q  181 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  34831710 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaataagagaattggtttcaagatttcaagcaatggatgaaaactataa 34831611  T
Q  281 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 380  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  34831610 atcgaacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaatcgttgctttctgatatgttat 34831511  T
Q  381 ggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcaggctcatgttgttgttgt 480  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||| |||    
T  34831510 ggggtgtttgttttttatgctttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagtaaatgtgca-gctcatgttgttgctgt 34831412  T
Q  481 tatggctattcttgtt 496  Q
    ||||||||||||||||    
T  34831411 tatggctattcttgtt 34831396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 34834315 - 34834235
Alignment:
Q  42 tgtgattcatggaaagaagaaacgatcactgagaaataaataatcatggaaaaattcagaaacccatagattgaaaagataa 123  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  34834315 tgtgattcatggaaagaagaaacaatcactgagaaataaataataatggaaaaattcag-aacccatagattgaaaagataa 34834235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 34831766 - 34831732
Alignment:
Q  153 gatgcaataacctagcctcaaaatccaattcaatc 187  Q
    ||||||||||||||||||||||||||||| |||||    
T  34831766 gatgcaataacctagcctcaaaatccaatccaatc 34831732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 181 - 496
Target Start/End: Original strand, 127875 - 128189
Alignment:
Q  181 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  127875 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaataagagaattggtttcaagatttcaagcaatggatgaaaaccataa 127974  T
Q  281 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 380  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  127975 atcgaacagggtcaaagaagcttggagaatcgcttctcttgcgacaccgacatcgacgtcgtaaagaagcttggagaatcgttgcgttctgatctgttat 128074  T
Q  381 ggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcaggctcatgttgttgttgt 480  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||| |||    
T  128075 ggggtgtttgttttttatgctttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagtaaatctgca-gctcatgttgttgctgt 128173  T
Q  481 tatggctattcttgtt 496  Q
    ||||||||||||||||    
T  128174 tatggctattcttgtt 128189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 127686 - 127792
Alignment:
Q  42 tgtgattcatggaaagaagaaacgatcactgagaaataaataatcatggaaaaattcagaaacccatagattgaaaagataacaaaaaacaagatgaatc 141  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  127686 tgtgattcatggaaagaagaaacaatcgctgagaaataaataatcatggaaaaattcagaaacccatagattaaaaagataaaagaaaacaagatgaatc 127785  T
Q  142 acggaaa 148  Q
    | |||||    
T  127786 atggaaa 127792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 371 - 496
Target Start/End: Complemental strand, 17930869 - 17930745
Alignment:
Q  371 gatctgttatggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcaggctcatg 470  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||| |||||||||||||||| || |||  |||  |||||||    
T  17930869 gatctgttatggggtgtttgtttttgatgctttcgatggtgaatgttattgagattaggttggggatgttgtcttgtggaagtaaatctgc-tgctcatg 17930771  T
Q  471 ttgttgttgttatggctattcttgtt 496  Q
     ||||| |||||||||| ||||||||    
T  17930770 ctgttgctgttatggctgttcttgtt 17930745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 17931089 - 17931036
Alignment:
Q  299 agcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagctt 352  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  17931089 agcttagagaatcgctcctcttgcgacgccggcatcgacgtcgcaaagaagctt 17931036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 127821 - 127853
Alignment:
Q  155 tgcaataacctagcctcaaaatccaattcaatc 187  Q
    ||||||||||||||||||||||||||| |||||    
T  127821 tgcaataacctagcctcaaaatccaatccaatc 127853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 181 - 496
Target Start/End: Original strand, 41365364 - 41365687
Alignment:
Q  181 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41365364 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 41365463  T
Q  281 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 380  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  41365464 atcgaacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgttgtaaagaagcttggagaatcgttgctttctgatctgttat 41365563  T
Q  381 ggggtgtttgttttttatg-----ttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcag---gctcatgtt 472  Q
    |||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||||     | | |||    
T  41365564 ggggtgtttgttttttatgctttaatttcgatggtgaatgttattgagataagattgtggatgttgacttgtgggagtaaatctgcagctatgttacgtt 41365663  T
Q  473 gttgttgttatggctattcttgtt 496  Q
    |||| |||||||||||||||||||    
T  41365664 gttgctgttatggctattcttgtt 41365687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 41365226 - 41365342
Alignment:
Q  71 tgagaaataaataatcatggaaaaattcagaaacccatagattgaaaagataacaaaaaacaagatgaatcacggaaaacaagatgcaataacctagcct 170  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41365226 tgagaaataaataatcatggaaaaattcagaactccatagattgaaaagataacaaaaaacaagatgaatcatggaaaacaagatgcaataacctagcct 41365325  T
Q  171 caaaatccaattcaatc 187  Q
    |||||| |||| |||||    
T  41365326 caaaattcaatccaatc 41365342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 285 - 451
Target Start/End: Original strand, 46638137 - 46638303
Alignment:
Q  285 aacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttatgggg 384  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||| | ||||||||||| ||||||||||    
T  46638137 aacagggtcaaagaaacttggagaatcgctcctcttgcgacaccgacattgacgtcgtaaagaagtttggagaatcgctgctttctgatatgttatgggg 46638236  T
Q  385 tgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtggga 451  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  46638237 tgtttgttttttatgctttcgatggtgaatgttattgagatgagattgaggatgttgtcttgtggga 46638303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 285 - 442
Target Start/End: Complemental strand, 34939754 - 34939597
Alignment:
Q  285 aacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttatgggg 384  Q
    |||||| |||||||| |||||||||||||||||||||| ||| || ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  34939754 aacaggttcaaagaaacttggagaatcactcctcttgcaacatcgacatcgacgtcgtaaagaagctaggagaatcgctgctttctgatctgttatgggg 34939655  T
Q  385 tgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgt 442  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||    
T  34939654 tgtttgttttttatgctttcgatggtgaatgttattgaggtgagattggggatgttgt 34939597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University