View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_high_9 (Length: 447)
Name: NF14497_high_9
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 84 - 431
Target Start/End: Original strand, 45681878 - 45682231
Alignment:
| Q |
84 |
gaaccttagtcattgaaggaaggagtcaataggtatgtcaagttctcaaattgaaccgtcctaataatc-----aagacagacaatagttgagacaaatc |
178 |
Q |
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| T |
45681878 |
gaaccttagtcattgaaggtaggagtcaataggtatgtcaagttctcaaattgaaccgtcctaataatcaaatcaagacagacaatagttgagacaaatc |
45681977 |
T |
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| Q |
179 |
taatccaaaatcacttgtataatatgctgtacagtatattataattaatttgtcttatcaatgctgagctgggattgtttatatannnnnnnnnnnnnnn |
278 |
Q |
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| T |
45681978 |
taatccaaaatcacttgtacaatatgctgtacagtatattataattaatttgtcttatcaatgctgagctgggattgtttatatatgtgtgtgtgttttt |
45682077 |
T |
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| Q |
279 |
nnnnnnnnngaaattttagtaattgtggcccctggtcccccatttatattctgcagccaagatgacttacataaggaaagaaatgtgtggcattattgtc |
378 |
Q |
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| T |
45682078 |
gtgtatgtggaaattttagtaattgtggcccctggtcccccatttatattctgcagccaagatgacttacataaggaaagaaatgtgtggcattattgtc |
45682177 |
T |
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| Q |
379 |
catgggattatgtgatattaatc-tttgtaggacatacctttaattaagcttat |
431 |
Q |
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| T |
45682178 |
catgggattatgtgatattaatcttttgtaggacatacctttaattaagcttat |
45682231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 45681772 - 45681824
Alignment:
| Q |
8 |
attcttgtttgaaaaaatgttgtacaagaaacatgcatgtatgggaaggactg |
60 |
Q |
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| T |
45681772 |
attcttgtttgaaaaaatgttgtacaagaaacatgcatgtatgggaaggactg |
45681824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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