View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_low_10 (Length: 442)
Name: NF14497_low_10
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 299 - 427
Target Start/End: Original strand, 9910673 - 9910801
Alignment:
| Q |
299 |
caaggttacacaaaaatgcaattatcatgtgaaagaaataaaagtgagagaaaagtcgggtgnnnnnnnttaaaataagggctctttacgtcagttttgt |
398 |
Q |
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| T |
9910673 |
caaggttacacaaaaatgcaattatcatgtgaaagaaataaaagtgagaaaaaagttgggtgaaaaaaattaaaataagggttctttacttcagttttgt |
9910772 |
T |
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| Q |
399 |
tacaaatttcattgttgatctatctaatg |
427 |
Q |
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| T |
9910773 |
tacaaatttcattgttgatctatctaatg |
9910801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 9910493 - 9910592
Alignment:
| Q |
119 |
ggtactgaattcgattcacactaaaaaagacttaagatcttgaaattaattttgttcaaagcagatctgcatatacaatggtgagaaaaacatccttgca |
218 |
Q |
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| T |
9910493 |
ggtactgcattcgattcacactaaaaaagatttgagatcttgaaattaattttgttcaaagcagatctgcatatacaatggtgagaaaaacatccttgca |
9910592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 9920515 - 9920607
Alignment:
| Q |
125 |
gaattcgattcacactaaaaaagacttaagatcttgaaattaattttgttcaaagcagatctgcatatacaatggtgagaaaaacatccttgc |
217 |
Q |
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| T |
9920515 |
gaattcgatttacactaaaaaagatttgagatcttggaattaattttattcagagcagatctgcgtatacaatggtgagaaaaacatctttgc |
9920607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 9920697 - 9920754
Alignment:
| Q |
302 |
ggttacacaaaaatgcaattatcatgtgaaagaaataaaagtgagagaaaagtcgggtg |
360 |
Q |
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| T |
9920697 |
ggttacacaaaaatgcaattttcgtgtgaaagaaat-aaagtgagagaaaagtagggtg |
9920754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 9920787 - 9920826
Alignment:
| Q |
388 |
gtcagttttgttacaaatttcattgttgatctatctaatg |
427 |
Q |
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| T |
9920787 |
gtcagttttgttacaaattttattgttgatctatctaatg |
9920826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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