View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14497_low_13 (Length: 306)

Name: NF14497_low_13
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14497_low_13
NF14497_low_13
[»] chr8 (1 HSPs)
chr8 (14-285)||(41966704-41966975)
[»] chr1 (4 HSPs)
chr1 (20-285)||(29453303-29453565)
chr1 (24-280)||(29443325-29443578)
chr1 (20-285)||(29467779-29468041)
chr1 (20-280)||(29423146-29423403)
[»] chr2 (33 HSPs)
chr2 (14-282)||(9284192-9284457)
chr2 (21-285)||(8573504-8573786)
chr2 (163-285)||(9065592-9065714)
chr2 (20-240)||(9320863-9321080)
chr2 (14-282)||(9291797-9292077)
chr2 (170-282)||(10371886-10371998)
chr2 (14-285)||(9315894-9316156)
chr2 (14-282)||(10352984-10353249)
chr2 (20-285)||(7115641-7115906)
chr2 (14-285)||(9061140-9061426)
chr2 (11-285)||(9328471-9328742)
chr2 (164-285)||(10335866-10335987)
chr2 (157-285)||(16269104-16269232)
chr2 (14-77)||(10335731-10335794)
chr2 (178-285)||(12006117-12006224)
chr2 (14-235)||(12018937-12019155)
chr2 (163-285)||(12012545-12012667)
chr2 (176-285)||(9364662-9364771)
chr2 (25-78)||(10347650-10347703)
chr2 (178-285)||(9274557-9274664)
chr2 (14-239)||(11987532-11987754)
chr2 (12-78)||(10371710-10371776)
chr2 (100-285)||(10347743-10347928)
chr2 (21-75)||(9065820-9065874)
chr2 (23-77)||(16268952-16269006)
chr2 (177-257)||(17566110-17566190)
chr2 (23-74)||(9274384-9274435)
chr2 (12-78)||(10341222-10341291)
chr2 (177-239)||(7611974-7612036)
chr2 (14-74)||(12012759-12012816)
chr2 (179-240)||(8579531-8579592)
chr2 (20-78)||(8579708-8579766)
chr2 (14-82)||(12006317-12006385)
[»] chr7 (5 HSPs)
chr7 (162-285)||(45243719-45243842)
chr7 (170-277)||(45230460-45230570)
chr7 (162-239)||(45237970-45238047)
chr7 (24-78)||(45230293-45230347)
chr7 (24-78)||(45243555-45243609)
[»] chr3 (3 HSPs)
chr3 (95-239)||(37462442-37462586)
chr3 (20-78)||(37462349-37462407)
chr3 (179-239)||(39427680-39427740)
[»] chr4 (2 HSPs)
chr4 (163-282)||(26574882-26575001)
chr4 (193-240)||(561273-561320)
[»] scaffold0667 (1 HSPs)
scaffold0667 (103-285)||(4432-4614)
[»] chr5 (1 HSPs)
chr5 (178-239)||(36224454-36224515)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 41966975 - 41966704
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966975 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 41966876  T
Q  114 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966875 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 41966776  T
Q  214 atattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41966775 atattctttcatcacccaaacatcaacatcgctagtttgataatccacaaccatacaaagacaccctcccaa 41966704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 29453565 - 29453303
Alignment:
Q  20 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 119  Q
    ||||||||||||||||||||| || ||| |||||||||||| | ||||||||||||||| |||   |||  |  | ||| |||||||||| | |||||||    
T  29453565 aaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttc---tcacaatctacttccaacagaaccatacttccat 29453469  T
Q  120 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattc 219  Q
    |||| ||| || |||||  || ||| | |||||||| | || ||||||| ||||   ||||||||||||||| |||||||||||||||| ||| ||||||    
T  29453468 cgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagctatctctacatccatattc 29453369  T
Q  220 tttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    ||||||||||||||||||||  | |  ||||||||||| ||||| |||||||||||||||| ||||    
T  29453368 tttcatcacccaaacatcaattttaacagtttgataattcacaatcatacaaagacacccttccaa 29453303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 29443578 - 29443325
Alignment:
Q  24 taggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccatcgct 123  Q
    |||||||||||||||||||| |||    ||||||||| | ||||||||||||||| |||   |||  |  | |||||||||||||| | |||| ||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc---tcacgatctacttgcaacagaaccatacttctatcgct 29443482  T
Q  124 agaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttc 223  Q
     ||| ||||||||| || ||| | | |||||| | || ||||||| |||| | |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  29443481 cgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatattctttc 29443382  T
Q  224 atcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccct 280  Q
    ||||||||||||||||  | |  ||||||||||| ||||| ||||||||||||||||    
T  29443381 atcacccaaacatcaattttagcagtttgataattcacaatcatacaaagacaccct 29443325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 29468041 - 29467779
Alignment:
Q  20 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 119  Q
    |||||||||||||||||||||||| |||  ||||||||||| | ||||||||||||||  |||   ||||    | |||  ||||||||| | |||||||    
T  29468041 aaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttc---tcatggtctacttcaaacagaaccatacttccat 29467945  T
Q  120 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattc 219  Q
    |||| ||| ||||||||  || ||| |||| |||   | |||||||||| ||| ||||||||||||||||||||| ||| ||||||||| ||| ||||||    
T  29467944 cgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacgccaactatctctacatccatattc 29467845  T
Q  220 tttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    |||||||| |||||||||||  | |||||||||||||| ||||| ||   ||||||||||||||||    
T  29467844 tttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagacaccctcccaa 29467779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 29423146 - 29423403
Alignment:
Q  20 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 119  Q
    |||||||||||||||| |||| || ||| |||||||||||| | ||||||||||||||| |||   |||  |  | |||||||||||||| | | |||||    
T  29423146 aaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttc---tcaggatctacttgcaacagaaccatacctccat 29423242  T
Q  120 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattc 219  Q
    |||| ||| || |||||| || ||| | |||||||| | | |||||||| ||||   |||||||||||||||||||||||||||||||| ||| ||||||    
T  29423243 cgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattc 29423342  T
Q  220 tttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccct 280  Q
    |||||||| |||||||||||  | |  ||||||||||| ||||  ||||||||| ||||||    
T  29423343 tttcatcagccaaacatcaattttaacagtttgataattcacagtcatacaaaggcaccct 29423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 9284457 - 9284192
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 113  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||| |||  |  ||  ||| ||   || |||||||| |    
T  9284457 tcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatctatttct---aatagaaccttac 9284361  T
Q  114 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 213  Q
    | ||||| |||||| ||||||||  || ||| |||||||||  | ||||||| |  ||||||||||||||||||| ||||||||| ||||||||||| |     
T  9284360 taccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactatctctagaacc 9284261  T
Q  214 atattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcc 282  Q
    ||||||||||||||||||||| ||||  | | |||||||||||| ||||| ||||| |||||| |||||    
T  9284260 atattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagacaacctcc 9284192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 8573786 - 8573504
Alignment:
Q  21 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttc------------------aaatcattaattccttgcaa 102  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |||                  ||| | | |||||||| |||    
T  8573786 aattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttcctatgacatacctccgacaaaacttcaattccttccaa 8573687  T
Q  103 cagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagcta 202  Q
    ||||||||| |||||||| |||||| ||||||||  || | | ||||| |||  || ||||||||| |||||||| |||||||||||||||||||| |||    
T  8573686 cagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaacta 8573587  T
Q  203 tctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    |||||||| | ||||||||||||||||||||||||||  ||| | |||| ||||| ||||  ||||||||||||||| |||||    
T  8573586 tctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacagacatacaaagacacccacccaa 8573504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 9065714 - 9065592
Alignment:
Q  163 gaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccaca 262  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| || | |||||| ||||| || |    
T  9065714 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaa 9065615  T
Q  263 accatacaaagacaccctcccaa 285  Q
    | |||||||||||||||||||||    
T  9065614 atcatacaaagacaccctcccaa 9065592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 9320863 - 9321080
Alignment:
Q  20 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 119  Q
    |||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||  | |||  |  |||  ||||| ||||||  ||||||    
T  9320863 aaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcagcatctac-cct--caacaaaaccttttttccat 9320959  T
Q  120 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattc 219  Q
    | || ||| ||||||||  || ||| |||||||||| | ||  | |||| |||||||||| |||||||||||||||||| ||||||||||| | ||||||    
T  9320960 cactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatattc 9321059  T
Q  220 tttcatcacccaaacatcaac 240  Q
    |||||||||||||||||||||    
T  9321060 tttcatcacccaaacatcaac 9321080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 9291797 - 9292077
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaa------------------ttc 95  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||  || ||| |                  |||    
T  9291797 tcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgatttacctccaacaaaacctgagttc 9291896  T
Q  96 cttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttaca 195  Q
    | | |||||||||||| |||||||| |||||| ||| ||||  || ||| ||||||||||      |||| |  ||||||||||||||||||||||||||    
T  9291897 cgtccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag------tgaaccgcgatttaaccaaagtaaaaagtttaca 9291990  T
Q  196 ccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcc 282  Q
    ||| ||||||||||| | ||||| ||||||||||||||||||||  | | |||||| ||||| ||||  ||||||||||||| ||||    
T  9291991 ccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacactctcc 9292077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 10371886 - 10371998
Alignment:
Q  170 gatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatac 269  Q
    ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||| | | |||||| ||||||||||  |||||    
T  10371886 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatac 10371985  T
Q  270 aaagacaccctcc 282  Q
    |||||||||||||    
T  10371986 aaagacaccctcc 10371998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 9315894 - 9316156
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 113  Q
    ||||| ||||||| |||||||||||||||| ||| |||||||||| |||| ||| |||||||||| |||  |  ||  ||| |   ||| |||||||| |    
T  9315894 tcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttcttacaatctatttc---caatagaaccttac 9315990  T
Q  114 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 213  Q
    |||| || |||||| ||||||||  |  |||  | ||||||||| |||||||||| || |||||||||||||||||||||||||| |||      ||||     
T  9315991 ttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacaccaacta------gatcc 9316084  T
Q  214 atattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    ||| |||||||||||||||||||||   | | |||||||||||| || || |||||||||||||||||||||    
T  9316085 atagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagacaccctcccaa 9316156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 10352984 - 10353249
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 113  Q
    ||||| |||||| ||||| ||| ||||||| ||| ||||| ||||| ||||||||||||||| || |||  | |||  |  |||  ||||| ||||||      
T  10352984 tcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaatagattctcaacatctac-cct--caacaaaacctttt 10353080  T
Q  114 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 213  Q
    ||| ||| || ||| ||||||||| || ||| |||| ||||| | ||  |||| |||||||||||| |||||||||||||||||| || |||||| |||     
T  10353081 ttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatcc 10353180  T
Q  214 atattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcc 282  Q
    ||||||||||||||||||||||||||  | | ||  || ||||||||||| ||||||||||||||||||    
T  10353181 atattctttcatcacccaaacatcaattttagtatctttataatccacaatcatacaaagacaccctcc 10353249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 7115906 - 7115641
Alignment:
Q  20 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 119  Q
    ||||||||||||||||||||| || ||| |||||| ||||||||||||||||||| ||| |||  |  ||  ||| |   ||| |||||||| |||||||    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatctatttc---caatagaaccttgcttccat 7115810  T
Q  120 cgctagaacaacctaaaacccccaaggattt---caaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgata 216  Q
    | |||||| ||||||||  ||  ||  || |   ||||||| ||  |||||| || |||||||| |||||||||||||||||||| |||||||||| |||    
T  7115809 cactagaataacctaaaggcctgaaccatgtaatcaaagataaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccata 7115710  T
Q  217 ttctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    || ||||||||||||||||||    | | |||||  ||||| ||||| |||||||||||||||||||||    
T  7115709 ttgtttcatcacccaaacatctgttttagtagttctataattcacaatcatacaaagacaccctcccaa 7115641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 9061426 - 9061140
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttc---------------aaatcattaattcctt 98  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||| |||               || | |  | || |||    
T  9061426 tcatcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttcctaagagttttatccaagttaggatttgctt 9061327  T
Q  99 gcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacacca 198  Q
     |||||||||||| | |||||| |||||| ||| |||   || |||  | | ||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  9061326 ccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacacca 9061227  T
Q  199 gctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
     ||||||||||||| ||| ||||||||||||||||||||||  | | ||| || ||||| ||||  ||| ||||||||||| |||||    
T  9061226 actatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataattcacagacatgcaaagacacccacccaa 9061140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 9328471 - 9328742
Alignment:
Q  11 acatcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaacct 110  Q
    |||||||  |||| ||||||||||||||||||| ||| |||| ||||| | ||||||||| ||||||| |||  |  ||  |  |||  ||||| |||||    
T  9328471 acatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatccac-cct--caacaaaacct 9328567  T
Q  111 tccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctaga 210  Q
    |  ||||||| ||  || ||||||||  || ||| |||||||||| | ||  |||||| |||||||||| |||||||||||||||||| ||||||||| |    
T  9328568 tttttccatcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctata 9328667  T
Q  211 tcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    || ||||| ||||||||||||||||||||  ||| |||||| ||||| || |  ||| |||||||||||||||||    
T  9328668 tccatattgtttcatcacccaaacatcaatttcagtagtttcataattcaaagtcatgcaaagacaccctcccaa 9328742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 10335866 - 10335987
Alignment:
Q  164 aaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaa 263  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||| | | ||||||||||||||||||||||||||  | | |||||||||||| ||||     
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacag 10335965  T
Q  264 ccatacaaagacaccctcccaa 285  Q
     || ||||||||||||||||||    
T  10335966 gcaaacaaagacaccctcccaa 10335987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 16269104 - 16269232
Alignment:
Q  157 tgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataa 256  Q
    |||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| ||| ||| ||||||||||||||||||||||  | | |||||| ||||    
T  16269104 tgaagtgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataa 16269203  T
Q  257 tccacaaccatacaaagacaccctcccaa 285  Q
    | ||||   ||||||||||| ||||||||    
T  16269204 ttcacagttatacaaagacatcctcccaa 16269232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 10335731 - 10335794
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaaca 77  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10335731 tcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaaca 10335794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 12006224 - 12006117
Alignment:
Q  178 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacac 277  Q
    ||||||||||||||||||||| |||||| || | | |||||||||||||||||| |||||||  | | |||||||||||| ||||| || ||||||||||    
T  12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgataattcacaatcaaacaaagacac 12006125  T
Q  278 cctcccaa 285  Q
    ||||||||    
T  12006124 cctcccaa 12006117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 12019155 - 12018937
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 113  Q
    ||||| |||||||||||||||||||||||| ||| ||| | |||||||||||||||||||| |||   || || || | || | | ||||| ||||||      
T  12019155 tcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccag---catattatgatttacatccaacaaaacctttt 12019059  T
Q  114 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 213  Q
    ||||||| || ||| ||||||||   | |||  || | |||| | ||  |||||| ||||  | ||||||||||||||||||||| ||||||||| |||     
T  12019058 ttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatcc 12018959  T
Q  214 atattctttcatcacccaaaca 235  Q
    ||||||||||||||||||||||    
T  12018958 atattctttcatcacccaaaca 12018937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 12012667 - 12012545
Alignment:
Q  163 gaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccaca 262  Q
    |||||| ||||  ||||||||||||||||||||||| |||||| || | | |||||||||||||||| | |||||||  | | ||||||||| || ||||    
T  12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcaca 12012568  T
Q  263 accatacaaagacaccctcccaa 285  Q
    | |||||||||||||||||||||    
T  12012567 atcatacaaagacaccctcccaa 12012545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 9364662 - 9364771
Alignment:
Q  176 accaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagac 275  Q
    ||||||||||| | ||||||||| |||||| |  ||| ||||||||||||||||||||||||||  | | |||||||||||| ||||| ||||| |||||    
T  9364662 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaagac 9364761  T
Q  276 accctcccaa 285  Q
    ||||||||||    
T  9364762 accctcccaa 9364771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 10347650 - 10347703
Alignment:
Q  25 aggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10347650 aggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacag 10347703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 9274557 - 9274664
Alignment:
Q  178 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacac 277  Q
    ||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||| ||||  ||| || || |||||| || |  |||||||||||||    
T  9274557 caaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacac 9274656  T
Q  278 cctcccaa 285  Q
    ||| ||||    
T  9274657 ccttccaa 9274664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 11987754 - 11987532
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 113  Q
    ||||| || ||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||| |||   | |||||     | ||||| ||||||      
T  11987754 tcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagcttcttgtgattaa---gatccaacaaaacctttt 11987658  T
Q  114 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 213  Q
    | ||||| || ||| |||| |||   | ||| |||||||||| | ||  |||||| ||||  | ||| || |||||||||||||| ||||||||| |||     
T  11987657 taccatcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacaccaactatctctacatcc 11987558  T
Q  214 atattctttcatcacccaaacatcaa 239  Q
    |||||||||||||||||||| |||||    
T  11987557 atattctttcatcacccaaatatcaa 11987532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 10371710 - 10371776
Alignment:
Q  12 catcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 78  Q
    ||||||| ||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  10371710 catcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacag 10371776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 285
Target Start/End: Original strand, 10347743 - 10347928
Alignment:
Q  100 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccag 199  Q
    |||||||||||| |||||||| |||||| ||| ||    || |||  ||||||||| | ||  |||||| || | | ||| ||||||||||||||||||     
T  10347743 caacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaa 10347842  T
Q  200 ctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    ||||||||| ||| |||||||||||| |||||||||||||  | | ||  || |||||| |||   ||||||||||||||||||||    
T  10347843 ctatctctacatccatattctttcatgacccaaacatcaattttagtatctttataatcgacagtgatacaaagacaccctcccaa 10347928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 9065874 - 9065820
Alignment:
Q  21 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaa 75  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||    
T  9065874 aattaggaactccttcaacataaataacttgttcactcttcaaatcataccaaaa 9065820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 16268952 - 16269006
Alignment:
Q  23 ttaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaaca 77  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  16268952 ttaggaattccttcaacataactaactcgttcactcttcaaatcataccaaaaca 16269006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 17566190 - 17566110
Alignment:
Q  177 ccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataat 257  Q
    |||| ||||| | |||||||||  |||||||| ||| ||||||||| ||||||||||||||||||| | ||||||||||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataat 17566110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 9274384 - 9274435
Alignment:
Q  23 ttaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaa 74  Q
    ||||||||||||| |||| || ||| ||||||||||||||||||||||||||    
T  9274384 ttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaa 9274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 10341222 - 10341291
Alignment:
Q  12 catcatcaaaattaggaattccttcaacataag---taatttgttcactcttcaaatcataccaaaacag 78  Q
    ||||||| |||| |||||||||||||||||||    ||| ||||||||||| ||||||||||||||||||    
T  10341222 catcatccaaatcaggaattccttcaacataataactaacttgttcactctccaaatcataccaaaacag 10341291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 7611974 - 7612036
Alignment:
Q  177 ccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 239  Q
    |||||||||| | ||||||||| |||||| |  ||| ||||||||||||||||||||||||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaa 7612036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 12012816 - 12012759
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaa 74  Q
    ||||| |||||||||||||||||||||||| ||| |||   ||||||||||||||||||||    
T  12012816 tcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaa 12012759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 8579592 - 8579531
Alignment:
Q  179 aaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaac 240  Q
    |||||||| | ||||||||| ||||||||| ||| ||||| ||||||||||||||| |||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaac 8579531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 8579766 - 8579708
Alignment:
Q  20 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 78  Q
    |||||||||||||||| |||| |||||| || |||||| || | |||||||||||||||    
T  8579766 aaattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacag 8579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 12006385 - 12006317
Alignment:
Q  14 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttc 82  Q
    ||||| ||||| |||||||| ||||  ||| ||| || ||||||||||||||||||||||| ||| |||    
T  12006385 tcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttc 12006317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 45243719 - 45243842
Alignment:
Q  162 tgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccac 261  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||  ||| |||||||||||| |||    
T  45243719 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcac 45243818  T
Q  262 aaccatacaaagacaccctcccaa 285  Q
    || ||||||||||||| |||||||    
T  45243819 aatcatacaaagacactctcccaa 45243842  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 45230460 - 45230570
Alignment:
Q  170 gatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaaca---tcactagtttgataatccacaacca 266  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| ||   | | |||||||||||| ||||| ||    
T  45230460 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcatcaattttattagtttgataattcacaatca 45230559  T
Q  267 tacaaagacac 277  Q
    |||||||||||    
T  45230560 tacaaagacac 45230570  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 45237970 - 45238047
Alignment:
Q  162 tgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 239  Q
    ||||||| |||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  45237970 tgaaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaa 45238047  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 45230293 - 45230347
Alignment:
Q  24 taggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 78  Q
    |||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacag 45230347  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 45243555 - 45243609
Alignment:
Q  24 taggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 78  Q
    |||||||||||| ||||||||||| ||||||||| || | |||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacag 45243609  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 37462442 - 37462586
Alignment:
Q  95 ccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttac 194  Q
    |||| ||||| |||||| |||||||| |||||| ||| ||||  || ||| |||||||||| |||||||||||| |||||| ||| |||| |||||||||    
T  37462442 ccttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttac 37462541  T
Q  195 accagctatctctagatcgatattctttcatcacccaaacatcaa 239  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||    
T  37462542 accaactatctctagatccatattctttcatcacccaaacatcaa 37462586  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 37462349 - 37462407
Alignment:
Q  20 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 78  Q
    |||||||||| |||||||| |||| ||| ||||||||||||| ||||||||||||||||    
T  37462349 aaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacag 37462407  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 39427680 - 39427740
Alignment:
Q  179 aaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 239  Q
    |||||||| | ||||||||| |||| |||| ||| ||||||||||||||||||||||||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaa 39427740  T

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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 26574882 - 26575001
Alignment:
Q  163 gaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccaca 262  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||  | | ||  || ||||||||||    
T  26574882 gaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccaca 26574981  T
Q  263 accatacaaagacaccctcc 282  Q
      ||||||||||||||||||    
T  26574982 gtcatacaaagacaccctcc 26575001  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 561273 - 561320
Alignment:
Q  193 acaccagctatctctagatcgatattctttcatcacccaaacatcaac 240  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||||    
T  561273 acaccaactatctctaaatccatattctttcattacccaaacatcaac 561320  T

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Target: scaffold0667 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 4432 - 4614
Alignment:
Q  103 cagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagcta 202  Q
    ||||||||| |||||||| |||||| ||| ||||   | | | |||||||||  |||||||| ||| ||||| | || |||||||||||||||||| |||    
T  4432 cagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaacta 4531  T
Q  203 tctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 285  Q
    ||| |  ||| ||||| ||||||||||||||||||||  | | |||||| ||||| ||||  |||||||||||| ||||||||    
T  4532 tcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaa 4614  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 36224454 - 36224515
Alignment:
Q  178 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 239  Q
    ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 36224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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