View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14497_low_15 (Length: 301)
Name: NF14497_low_15
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 5193342 - 5193613
Alignment:
| Q |
12 |
aatactatgtcctaccaaaaggtgtaattgaagtcaaatcgcttactgagttagtgttgatgccgggaatcggagttgatacagcattcatgaatcattc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5193342 |
aatactatgtcctaccaaaaggtgtaattgaagtcaaatcgcttactgagttagtgttgatgccgggaatcggagttgatacagcattcatgaatcattc |
5193441 |
T |
|
| Q |
112 |
aattaaatttttctcactaagagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaacatctcatttcttgttgtccttcaattgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
5193442 |
aattaaatttttctcactaagagtattgtcattgtggggtgtccttgtgagagacgaacatgcaatcgaacatctcatttcttgttgtcctttgattgaa |
5193541 |
T |
|
| Q |
212 |
catataactgtgagcttttgttcagtgttgcgccctaatggcgcaacaaatcgtctacttgaggggagcatg |
283 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5193542 |
catataactgtgagcttttgttcagtgttgcgccctaatggcgcaacaaatcgtctacttgaggggagcatg |
5193613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 5203584 - 5203841
Alignment:
| Q |
16 |
ctatgtcctaccaaaaggtgtaattgaagtcaaatcgcttactgagttagtgttgatgccgggaatcggagttgatacagcattcatgaatcattcaatt |
115 |
Q |
| |
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||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| || |||||||||||||||||| |
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| T |
5203584 |
ctatgtcttaccgaatggtgtaattgaagtcaaatcgcttactgagttggtgttgatggggggaattagagttgatactgcgttcatgaatcattcaatt |
5203683 |
T |
|
| Q |
116 |
aaatttttctcactaagagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaacatctcatttcttgttgtccttcaattgaacata |
215 |
Q |
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||||||||||| ||| ||||||||||||||| | ||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
5203684 |
aaatttttctcgttaaaagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaacata |
5203783 |
T |
|
| Q |
216 |
taactgtgagcttttgttcagtgttgcgccctaatggcgcaacaaatcgtctacttga |
273 |
Q |
| |
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||||| ||| | |||||| || ||| |||||||| |||||||||| ||||||||| |
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|
| T |
5203784 |
taactttgaagtgttgttctgtattgatccctaatgtcgcaacaaattttctacttga |
5203841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 84 - 273
Target Start/End: Original strand, 6230090 - 6230279
Alignment:
| Q |
84 |
gagttgatacagcattcatgaatcattcaattaaatttttctcactaagagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaaca |
183 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
6230090 |
gagttgatacagcattcatgaatcgttcaattaaatttttctcattaagaatattgtcattgaagcatgtcctttccagagacgaacatgcaattgaaca |
6230189 |
T |
|
| Q |
184 |
tctcatttcttgttgtccttcaattgaacatataactgtgagcttttgttcagtgttgcgccctaatggcgcaacaaatcgtctacttga |
273 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||| ||||||||| |
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| T |
6230190 |
tctcatttcttgttgtcctttaattgaacatataactttgagggattgttcaatgttgagccctaatggcgcaacaaatcatctacttga |
6230279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 5170271 - 5170373
Alignment:
| Q |
24 |
taccaaaaggtgtaattgaagtcaaatcgcttactgagttagtgttgatgccgggaatcggagttgatacagcattcatgaatcattcaattaaattttt |
123 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||||||||||| || |||||| |||||||| |||||||||||||||||||||||| ||||| |
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| T |
5170271 |
taccaaacggtgtaattgaagtcaaattgcttaccaagttagtgttggtggggggaattagagttgatcaagcattcatgaatcattcaattaagttttt |
5170370 |
T |
|
| Q |
124 |
ctc |
126 |
Q |
| |
|
||| |
|
|
| T |
5170371 |
ctc |
5170373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 273
Target Start/End: Original strand, 5174495 - 5174692
Alignment:
| Q |
76 |
gggaatcggagttgatacagcattcatgaatcattcaattaaatttttctcactaagagtattgtcattgtgtggtgtcc-ttgtgagagacgaacatgc |
174 |
Q |
| |
|
||||||| |||||||| | ||||||||||| |||||||||| | ||||||| | ||||||||||||||||| | |||| |||||| | | || ||||| |
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|
| T |
5174495 |
gggaatcagagttgatcaatcattcatgaataattcaattaagtgtttctcattgagagtattgtcattgtgggaggtcctttgtga-atatgagcatgc |
5174593 |
T |
|
| Q |
175 |
aattgaacatctcatttcttgttgtccttcaattgaacatataactgtgagcttttgttcagtgttgcgccctaatggcgcaacaaatcgtctacttga |
273 |
Q |
| |
|
|||||| |||| |||||| ||||||||| ||||||||||||||| ||| | ||||||||||||| |||||| || | | ||||||| |||| |||| |
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|
| T |
5174594 |
aattgagaatctgatttctcgttgtcctttgattgaacatataactttgaagtgttgttcagtgttgagccctagtgtcaccacaaatcatctatttga |
5174692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 1797625 - 1797525
Alignment:
| Q |
120 |
ttttctcactaagagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaacatctcatttcttgttgtccttcaattgaacatataac |
219 |
Q |
| |
|
|||||||| |||||||| |||||||||| | |||| || || ||||||||||| |||||||||| | |||||||||||||| | |||||||||||||| |
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|
| T |
1797625 |
ttttctcattaagagtactgtcattgtgggatgtcgtttcgaaagacgaacatgtaattgaacattttatttcttgttgtccgttgattgaacatataac |
1797526 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
|
|
| T |
1797525 |
t |
1797525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 5176994 - 5177203
Alignment:
| Q |
16 |
ctatgtcctaccaaaaggtgtaattgaagtcaaatcgcttactgagttagtgttgatgccgggaatcggagttgatacagcattcatgaatcattcaatt |
115 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
5176994 |
ctatgtcctacccaagggtgtaattgaagtcaaatccattactgagttagtgttgatggggggaatcaaagttgatacatcattcatgaatcattcaatt |
5177093 |
T |
|
| Q |
116 |
aaatttttctcactaagagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaacatctcatttcttgttgtccttcaattgaacata |
215 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5177094 |
aaatttttctcattaagagttttgtcattgaagcatgtcctttctagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaacata |
5177193 |
T |
|
| Q |
216 |
taactgtgag |
225 |
Q |
| |
|
||||| |||| |
|
|
| T |
5177194 |
taactttgag |
5177203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 8553164 - 8553028
Alignment:
| Q |
84 |
gagttgatacagcattcatgaatcattcaattaaatttttctcactaagagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaaca |
183 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||| ||| | ||||||||||||||||| ||| ||| || ||| |||||||||||||| || |
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|
| T |
8553164 |
gagttgatcaagcattcatgaatcagtcaattaagtttttttcattgagagtattgtcattgtggattgttcttttggaagatgaacatgcaattgagca |
8553065 |
T |
|
| Q |
184 |
tctcatttcttgttgtccttcaattgaacatataact |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8553064 |
tctcatttcttgttgtcctttcattgaacatataact |
8553028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 49610519 - 49610707
Alignment:
| Q |
32 |
ggtgtaattgaagtcaaatcgcttactgagttagtgttgatgccgggaatcggagttgatacagcattcatgaatcattcaattaaatttttctcactaa |
131 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| || |||||| ||||||| || ||||| |||||||||| |||| |||||||| ||||| || | | |
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|
| T |
49610519 |
ggtgtaattgaagcaaaatcacttaccaagttggtattgatggggggaatcagaattgatcaagcattcatgcatcagtcaattaagtttttttcgttga |
49610618 |
T |
|
| Q |
132 |
gagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaacatctcatttcttgttgtccttcaattgaacatataact |
220 |
Q |
| |
|
||||||||||||||| | |||||| || || | || |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
49610619 |
tagtattgtcattgtgggaagtccttttgggaaatgagcatgcaattgaacatctcatttcttgttgtcctttgattgaacatataact |
49610707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 16472229 - 16472355
Alignment:
| Q |
98 |
ttcatgaatcattcaattaaatttttctcactaagagtattgtcattgtgtggtgtccttgtgagagacgaacatgcaattgaacatctcatttcttgtt |
197 |
Q |
| |
|
||||||||||| |||||| ||||||||||| | |||||||||||||| ||| |||||||| ||||||| ||||||||||||| || |||||||| || |
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|
| T |
16472229 |
ttcatgaatcagtcaattcaatttttctcattgagagtattgtcattatgttgtgtcctttcgagagac-aacatgcaattgagcaattcatttctcatt |
16472327 |
T |
|
| Q |
198 |
gtccttcaattgaacatataactgtgag |
225 |
Q |
| |
|
|||||| ||||||||||||||| |||| |
|
|
| T |
16472328 |
gtcctttgattgaacatataactttgag |
16472355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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