View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14497_low_18 (Length: 271)
Name: NF14497_low_18
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 38633604 - 38633724
Alignment:
| Q |
134 |
caaccgtattaattatcggttaataatagtaatatggtacaattcttcggnnnnnnnngtagtaatttgtacaatcnnnnnnntcatttcaaattttgta |
233 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
38633604 |
caaccgtactaattatcggttaataatagtaatatggtacaattcttcag--aaaaaagtagtaatttgtacaatcaaaaaaatcatttcatattttgta |
38633701 |
T |
|
| Q |
234 |
aaagtagttattctaaaccaaac |
256 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38633702 |
aaagtagttattctaaaccaaac |
38633724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 38633480 - 38633530
Alignment:
| Q |
11 |
aatagtttgtaaattgaactagtttgatttgtgaactatcaatgtggtttg |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633480 |
aatagtttgtaaattgaactagtttgatttgtgaactatcaatgtggtttg |
38633530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University