View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_low_23 (Length: 232)
Name: NF14497_low_23
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 39288680 - 39288883
Alignment:
| Q |
12 |
gaaatgaagatagcaaggttttcaagttgccgcggtgttgcattcgagatcaatcctaacagaagaagcccttttgcaattgaatcaccaacaaagccag |
111 |
Q |
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| T |
39288680 |
gaaatgaagatagcaaggttttcaagttgccgcggtgttgcattcgagatcaatcctaacagaagaagcccttttgcaattgaatcaccaacaaagccag |
39288779 |
T |
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| Q |
112 |
agagaactggaacatggctttggattcctcggacaagaaacaattctttcaaaattcttcctcagagtcaaggtattagtccaactcggagtcgagcaag |
211 |
Q |
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| T |
39288780 |
agagaactggaacatggctttggattcctcggacaagaaacaattctttcaaaattcttcctcagagtcaaggtattagtccaactcggagtcgagcaag |
39288879 |
T |
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| Q |
212 |
tagt |
215 |
Q |
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|||| |
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| T |
39288880 |
tagt |
39288883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 39295592 - 39295724
Alignment:
| Q |
29 |
gttttcaagttgccgcggtgttgcattcgagatcaatcctaacagaagaagcccttttgcaattgaatcaccaacaaagccagagagaactggaacatgg |
128 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |||||| | | ||||||||| |
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| T |
39295592 |
gttttcaagttgccgcggtgtttccttcgagatcaatcctaacaaaagcagcccttttgcaattgaatcaacaacaaagacagagaaagcaggaacatgg |
39295691 |
T |
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| Q |
129 |
ctttggattcctc---ggacaagaaacaattct |
158 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
39295692 |
ctttggattcctccatggacaagaaacaattct |
39295724 |
T |
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