View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_low_4 (Length: 586)
Name: NF14497_low_4
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 11417458 - 11417869
Alignment:
| Q |
16 |
gaggaggaaggggagaggaggaagatccaagcttagctaagaagtcaacataactattatcttaacaaagggtctgggcgatgaatatggtccatcttgt |
115 |
Q |
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| T |
11417458 |
gaggaggaaggggagaggaggaagatccaagcttagctaagaagtcaacataactattatcttaacaaagggtctgggcgatgaatatggtccatcttgt |
11417557 |
T |
|
| Q |
116 |
aagttcgtctctctagtcaacaaaagcccctgatgaatagcatggagctcatccagaaggatgtcagtggcacctgtaacgtagcctaaaatcctgaaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11417558 |
aagttcgtctctctagtcaacaaaagcccctgatgaatagcatggagctcatccagaaggaagtcagtggcacctgtaacgtagcctaaaatcctgaaat |
11417657 |
T |
|
| Q |
216 |
ccatgtcgcggaagaaaagcgttgtaagcctccatagcctgcgctgatgggattttcaaaacagctaccatcaatattgatgattgtggagatatgatta |
315 |
Q |
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|||| |||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11417658 |
ccatatcgctgaaggaaagcattgtaagcttccatagcctgcgctgatgggattttcaaaacagctaccatcaatattgatgattgtggagatatgatta |
11417757 |
T |
|
| Q |
316 |
gatgagtttcacttgcgggaaatcagggtggtggacaaatttctagcttccattgcaaggcggtaagtaaggatcagagcatttgaaaaataagcagagt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11417758 |
gatgagtttcacttgcgggaaatcagggtggtggacaaatttctagcttccattgcaaggcggtaagtaaggatcagagcatttgaaaaataagcagagt |
11417857 |
T |
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| Q |
416 |
ttctatttcttg |
427 |
Q |
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|||||||||||| |
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| T |
11417858 |
ttctatttcttg |
11417869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 455 - 571
Target Start/End: Original strand, 11417865 - 11417981
Alignment:
| Q |
455 |
tcttggaattgattgaagtaaagccatgcatgagccaatcacgagggtccatattgttgaagaaatcagtaaatgtgaaacctataagatgtcaaaggtt |
554 |
Q |
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| T |
11417865 |
tcttggaattgattgaagtaaagccatgcatgagccaatcacgagggtccatattgttgaagaaatcagtaaatgtgaaacctataagatgtcaaaggtt |
11417964 |
T |
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| Q |
555 |
cttggaggctgcatagt |
571 |
Q |
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||||| ||||||||||| |
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| T |
11417965 |
cttggcggctgcatagt |
11417981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 537
Target Start/End: Complemental strand, 5508577 - 5508452
Alignment:
| Q |
411 |
agagtttctatttcttgaagaccaccacactccaacatcaaagatcttggaattgattgaagtaaagccatgcatgagccaatcacgagggtccatattg |
510 |
Q |
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||||||||||||||| | ||||||||||||| ||||||||| || ||||| | || || |||| |||| || || ||||||||| ||||| |||||| |
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| T |
5508577 |
agagtttctatttctccacgaccaccacactctaacatcaaatattttggagtcgagcgaggtaaggccaagcttgggccaatcacaagggt-aatattg |
5508479 |
T |
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| Q |
511 |
ttgaagaaatcagtaaatgtgaaacct |
537 |
Q |
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| T |
5508478 |
ttgaagaactcaacaaatgtgaaacct |
5508452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 14041756 - 14041661
Alignment:
| Q |
349 |
gacaaatttctagcttccattgcaaggcggtaagtaaggatcagagcatttgaaaaataagcagagtttctatttcttgaagaccaccacactcca |
444 |
Q |
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| T |
14041756 |
gacaaatttctagcttccatggcaagacgttaagtagatatcggagcatttgagaagcaagtagaatttatatttctccaagaccaccacaatcca |
14041661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 571
Target Start/End: Complemental strand, 21138403 - 21138166
Alignment:
| Q |
334 |
gaaatcagggtggtggacaaatttctagcttccattgcaaggcggtaagtaaggatcagagcatttgaaaaataagcagagtttctatttcttgaagacc |
433 |
Q |
| |
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|||||||| ||||| |||||| |||||||||||| ||||| | ||||| |||||| ||||||||| ||| || | |||| ||||||| | |||| |
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| T |
21138403 |
gaaatcagtgtggtagacaaaattctagcttccacggcaagttgctaagttgggatcaaagcatttgagaaacaattaaagttcttatttctccatgacc |
21138304 |
T |
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| Q |
434 |
accacactccaacatcaaagatcttggaattgattgaagtaaagccatgcatgagccaatcacgagggtccatattgttgaagaaatcagtaaatgtgaa |
533 |
Q |
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||||||||| | || | |||| |||||| || || | |||| | || || ||||| ||| ||| |||||||||| |||||||| |||||| || ||| |
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| T |
21138303 |
accacactctagcagcctagatgttggaactggttaaggtaaggacaagcttgagctaattgcgatggtccatattattgaagaactcagtagatacgaa |
21138204 |
T |
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| Q |
534 |
acctataagatgtcaaaggttcttggaggctgcatagt |
571 |
Q |
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||||| | |||| |||| ||| | ||||| ||||||| |
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| T |
21138203 |
acctagatgatgccaaatattcatagaggccgcatagt |
21138166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 21138496 - 21138451
Alignment:
| Q |
283 |
ccatcaatattgatgattgtggagatatgattagatgagtttcact |
328 |
Q |
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||||||| ||||||||| ||||||| |||||||| ||||||||||| |
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| T |
21138496 |
ccatcaacattgatgatcgtggagagatgattaggtgagtttcact |
21138451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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