View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_low_5 (Length: 545)
Name: NF14497_low_5
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 36955539 - 36955017
Alignment:
| Q |
1 |
ggttgtcatacgatttatttgattcttggagccttagaatgatgagtgttaacattgacagcttttaatactttaaaacctatcattgaggggcatgtgg |
100 |
Q |
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| T |
36955539 |
ggttgtcatacgatttatttgattcttggagccttagaatgatgagtgttaacattgacagcttttaatactttaaaacctatcattgaggggcatgtgg |
36955440 |
T |
|
| Q |
101 |
aaagagtaacgtgattaccagacaattatacatttgcaattatcatagaaatgattgtgctccaattaggtctcctatcattgaatttttggttattctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955439 |
aaagagtaacgtgattaccagacaattatacatttgcaattatcatagaaatgattgtgctccaattaggtctcctatcattgaatttttggttattctt |
36955340 |
T |
|
| Q |
201 |
gttgatccatatcacattgacaattttaaagaatagctgcaatgatgacaattttaagttgaatgctccaacctttaatac--ataacatctgaaacatc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36955339 |
gttgatccatatcacattgacaattttaaagaatagctgcaatgatgacaattttgagttgaatgctccaacctttaatacatataacatctgaaacatc |
36955240 |
T |
|
| Q |
299 |
catagttgagtttaagttgctattaatattgattatagttatagagcaaaaccaaatccataatgacaaagcaaaatggcattgtaaaaacagatgatga |
398 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955239 |
catagttgagtttaagttgctattaatattga------ttatagagcaaaaccaaatccataatgacaaagcaaaatggcattgtaaaaacagatgatga |
36955146 |
T |
|
| Q |
399 |
gaagaatatgcttgcttgttgtacaagttataaattgaggggtgattgcaaccccttctcatcaaacattcctatggatgcactcgatctattatgaatt |
498 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955145 |
gaaaaatatgcttgcttgttgtacaagttataaattgaggggtgattgcaaccccttctcatcaaacattcctatggatgcactcgatctattatgaatt |
36955046 |
T |
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| Q |
499 |
gatctctatatcaagagagatttggaagg |
527 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36955045 |
gatctctatatcaagagagatttggaagg |
36955017 |
T |
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