View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14497_low_6 (Length: 524)

Name: NF14497_low_6
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14497_low_6
NF14497_low_6
[»] chr3 (7 HSPs)
chr3 (404-503)||(3080135-3080234)
chr3 (413-503)||(3094011-3094101)
chr3 (416-507)||(4549198-4549289)
chr3 (11-97)||(3080232-3080318)
chr3 (234-300)||(42091795-42091861)
chr3 (195-273)||(20519429-20519507)
chr3 (203-291)||(54437651-54437739)
[»] chr7 (7 HSPs)
chr7 (140-299)||(34891371-34891529)
chr7 (146-299)||(3191650-3191803)
chr7 (156-299)||(42012641-42012781)
chr7 (197-303)||(32962358-32962464)
chr7 (250-302)||(31171313-31171365)
chr7 (237-298)||(31152738-31152799)
chr7 (321-385)||(32988604-32988667)
[»] chr4 (8 HSPs)
chr4 (147-299)||(25234284-25234436)
chr4 (208-295)||(11020059-11020145)
chr4 (234-289)||(54000220-54000275)
chr4 (321-386)||(25234449-25234513)
chr4 (235-295)||(20512832-20512892)
chr4 (327-387)||(22050624-22050682)
chr4 (234-270)||(22050732-22050768)
chr4 (447-479)||(36290293-36290325)
[»] chr6 (4 HSPs)
chr6 (193-299)||(23577014-23577120)
chr6 (251-302)||(20206476-20206527)
chr6 (251-302)||(22100499-22100550)
chr6 (259-302)||(32342603-32342646)
[»] chr5 (7 HSPs)
chr5 (156-299)||(7113710-7113854)
chr5 (178-303)||(39730394-39730519)
chr5 (197-302)||(973114-973219)
chr5 (225-303)||(2243311-2243389)
chr5 (216-273)||(5205524-5205581)
chr5 (197-302)||(7215264-7215368)
chr5 (197-302)||(37077763-37077868)
[»] chr2 (7 HSPs)
chr2 (178-298)||(13712867-13712987)
chr2 (170-302)||(16576420-16576552)
chr2 (162-302)||(16576251-16576390)
chr2 (197-283)||(2909844-2909930)
chr2 (234-299)||(35371117-35371182)
chr2 (216-302)||(16863459-16863545)
chr2 (237-302)||(13712757-13712822)
[»] chr8 (9 HSPs)
chr8 (203-302)||(32166608-32166707)
chr8 (156-245)||(32166727-32166816)
chr8 (413-508)||(15805837-15805932)
chr8 (413-503)||(15697845-15697935)
chr8 (139-303)||(33897571-33897735)
chr8 (410-508)||(15712267-15712365)
chr8 (195-285)||(37010310-37010400)
chr8 (235-299)||(33897743-33897807)
chr8 (226-302)||(34695832-34695908)
[»] chr1 (9 HSPs)
chr1 (138-284)||(44342107-44342254)
chr1 (204-302)||(68100-68198)
chr1 (161-302)||(35956986-35957125)
chr1 (257-302)||(35660763-35660808)
chr1 (259-302)||(24873768-24873811)
chr1 (259-302)||(24874601-24874644)
chr1 (256-302)||(10775166-10775212)
chr1 (242-302)||(45967838-45967898)
chr1 (251-303)||(52432835-52432887)
[»] scaffold0047 (1 HSPs)
scaffold0047 (247-303)||(62744-62800)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 404 - 503
Target Start/End: Complemental strand, 3080234 - 3080135
Alignment:
404 ttaaaagtgaaaacataccaaatagatgaaagtcgaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaa 503  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
3080234 ttaaaagtgaaaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcttcaatgcaacaacccaa 3080135  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 413 - 503
Target Start/End: Complemental strand, 3094101 - 3094011
Alignment:
413 aaaacataccaaatagatgaaagtcgaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaa 503  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3094101 aaaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaa 3094011  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 416 - 507
Target Start/End: Original strand, 4549198 - 4549289
Alignment:
416 acataccaaatagatgaaagtcgaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaatagt 507  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
4549198 acataccaaatagataaaagtcgaggctagagtttggcatgtattcatatagaagcaacttttcattatcctcaatgcaacaacccaatagt 4549289  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 3080318 - 3080232
Alignment:
11 gaagaatatgttagtatttgacacaaaaatgtatggagcaaacaacatagaataagtaacacgggaaacttgtgcttgaagtattta 97  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||  ||||| |||||    
3080318 gaagaaaatgttagtatttgacacaaaaatgtatggagcagacagcatagaataagtaacatgggagacttgtggatgaagaattta 3080232  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 42091795 - 42091861
Alignment:
234 cacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaag 300  Q
    |||||||||||| || || || || ||||||||||||||| | ||||||||||||||| ||||||||    
42091795 cacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaag 42091861  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 20519429 - 20519507
Alignment:
195 acaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgttttt 273  Q
    ||||||| ||||||||||||||||||||  |||| | | |||| ||| ||| ||| |||| || |||||||||||||||    
20519429 acaaatatgattcaattttggaacgaaaaagatggatatcacacgttgaatgaagaaaatgaaaaagtttgatgttttt 20519507  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 54437739 - 54437651
Alignment:
203 gattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataatt 291  Q
    |||| |||| ||||||||||| |||| ||   ||||||||||| ||||| || ||||||||| ||||| || | ||||||||| |||||    
54437739 gattaaattctggaacgaaagagatgaagtttacatgttaaatgaaggatatgaagaagtttaatgttattgagatgaaaatggtaatt 54437651  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 34891529 - 34891371
Alignment:
140 atatcggtgagtctatatttttccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatg 239  Q
    ||||||||||| ||||||| |||||||||||| | || |||||||| ||||| |||||||||| |||| |||| |||| ||||| ||| |||| ||||||    
34891529 atatcggtgagcctatattcttccttgatgaactggg-gtaatttacccctcatgacaaatacaattcgatttgggaatgaaagagatctagatcacatg 34891431  T
240 ttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaa 299  Q
    |||||| ||| | |||||||||||||||||| |||| ||||||||||||||  |||||||    
34891430 ttaaatgaagaagataaagaagtttgatgttcttaatatgaaaatgataatgaattgtaa 34891371  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 146 - 299
Target Start/End: Original strand, 3191650 - 3191803
Alignment:
146 gtgagtctatatttttccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaat 245  Q
    ||||||||| |||||||||  ||| ||| |  |||||||| || || || ||||||||||||||||||| || ||||| |||||| | ||||| ||||||    
3191650 gtgagtctacatttttcctccatgtattggcggtaatttacccttcatgtcaaatacgattcaattttgaaatgaaagggatgtaaatcacatcttaaat 3191749  T
246 aaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaa 299  Q
     ||||| ||||| || ||| ||||||| || ||||||| |||||||||||||||    
3191750 gaaggagataaataaatttaatgttttaaagatgaaaacgataattgattgtaa 3191803  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 42012781 - 42012641
Alignment:
156 atttttccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaata 255  Q
    ||||||||||||| |||| || |||||||||||||| ||||| ||| ||||| ||||||||||||||  |||||| | ||||| |||||| ||  | ||     
42012781 atttttccttgattaattggg-gtaatttatccctcatgacatatatgattcgattttggaacgaaaaagatgtaaatcacatcttaaatgaa--agatt 42012685  T
256 aagaagtttgatgtttttaaaatgaaaatgataattgattgtaa 299  Q
    |||||||||||||||||||| || || || |||| |||||||||    
42012684 aagaagtttgatgtttttaagataaagatcataactgattgtaa 42012641  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 32962358 - 32962464
Alignment:
197 aaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattg 296  Q
    ||||| ||||| |||||| ||| |||   ||||||| || ||||| ||||||||| || || ||||||||| || |||||||||| ||||||||||||||    
32962358 aaatatgattcgattttgaaacaaaaaatatgtagatcatatgttgaataaaggagatgaaaaagtttgattttcttaaaatgaatatgataattgattg 32962457  T
297 taagaag 303  Q
    | |||||    
32962458 tcagaag 32962464  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 31171313 - 31171365
Alignment:
250 gaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||| |||||| ||||||||||||| ||||||||| |||||| |||||||||    
31171313 gaaatgaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaa 31171365  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 31152738 - 31152799
Alignment:
237 atgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgta 298  Q
    ||||| ||| || ||||| |||||| ||||||||||||| ||||||||| |||||| |||||    
31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaattggttgta 31152799  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 32988604 - 32988667
Alignment:
321 aatatgatttttccttgaaaggagtaaattaccccccaattcatcgaggggtaacgtagaaaaaa 385  Q
    ||||||||||||| |||| | | |||||||||||| |||||||||||||| ||| ||| ||||||    
32988604 aatatgatttttctttgatatgtgtaaattacccc-caattcatcgagggataatgtataaaaaa 32988667  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 299
Target Start/End: Original strand, 25234284 - 25234436
Alignment:
147 tgagtctatatttttccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaata 246  Q
    |||| ||| ||||||||||||||||||  | |||||||| | ||| ||||||||||||||| ||||||||||| ||| | | || | ||||  ||||||     
25234284 tgagcctacatttttccttgatgaattacgggtaatttaccgctcatgacaaatacgattcgattttggaacgtaagaggtataaatcacaccttaaatg 25234383  T
247 aaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaa 299  Q
    ||||| ||||| |||||||||||||||||||||||| |||||| |||||||||    
25234384 aaggagataaataagtttgatgtttttaaaatgaaagtgataactgattgtaa 25234436  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 11020059 - 11020145
Alignment:
208 aattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgatt 295  Q
    ||||||| |||||||| |||| | | |||||||||||||||||| ||||| | ||||||| ||||||| ||||||||||||| |||||    
11020059 aattttgaaacgaaagagatgcaaatcacatgttaaataaaggagataaa-aggtttgatatttttaagatgaaaatgataactgatt 11020145  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 54000220 - 54000275
Alignment:
234 cacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataa 289  Q
    ||||| |||||| ||||| ||||||||||||||||||||||| || ||||||||||    
54000220 cacatcttaaatgaaggagataaagaagtttgatgtttttaagataaaaatgataa 54000275  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 25234449 - 25234513
Alignment:
321 aatatgatttttccttgaaaggagtaaattaccccccaattcatcgaggggtaacgtagaaaaaac 386  Q
    ||||| |||||||   |||||| |||||||||||| ||||||||||| ||||||||||||||||||    
25234449 aatataatttttcacggaaaggggtaaattacccc-caattcatcgaagggtaacgtagaaaaaac 25234513  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 20512832 - 20512892
Alignment:
235 acatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgatt 295  Q
    ||||||||||| ||| | || |||||||||||||||| ||| |||||||||| ||||||||    
20512832 acatgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatgacaattgatt 20512892  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 22050682 - 22050624
Alignment:
327 atttttccttgaaaggagtaaattaccccccaattcatcgaggggtaacgtagaaaaaaca 387  Q
    ||||||| || ||||| ||||||||||||  || ||||| |||||||||||||||||||||    
22050682 atttttctttaaaaggggtaaattacccc--aaatcatcaaggggtaacgtagaaaaaaca 22050624  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 22050768 - 22050732
Alignment:
234 cacatgttaaataaaggaaataaagaagtttgatgtt 270  Q
    |||||||||||| |||||||| |||||||||||||||    
22050768 cacatgttaaatgaaggaaatgaagaagtttgatgtt 22050732  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 479
Target Start/End: Complemental strand, 36290325 - 36290293
Alignment:
447 gtttggcatgtattcatatacaagcaacttttc 479  Q
    |||||||||||||||||||||||| ||||||||    
36290325 gtttggcatgtattcatatacaagtaacttttc 36290293  T

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Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 23577120 - 23577014
Alignment:
193 tgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattg 292  Q
    ||||||||||||||| |||||||||  |||| |||||| |  |||| ||||||||| || |||||||| ||| |||||||||||||||||||||||||||    
23577120 tgacaaatacgattcgattttggaataaaagagatgtaaataacatcttaaataaaagagataaagaaattttatgtttttaaaatgaaaatgataattg 23577021  T
293 attgtaa 299  Q
    |||||||    
23577020 attgtaa 23577014  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 20206476 - 20206527
Alignment:
251 aaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||||||    
20206476 aaattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 20206527  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 22100499 - 22100550
Alignment:
251 aaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||||||    
22100499 aaattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 22100550  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 32342646 - 32342603
Alignment:
259 aagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
32342646 aagtttgatgtttttgagatgaaaatgataattgattgtaagaa 32342603  T

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Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 156 - 299
Target Start/End: Original strand, 7113710 - 7113854
Alignment:
156 atttttccttgatgaattt-ggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaat 254  Q
    ||||||||||||||||||  || |||||||| | ||  || |||||||||||||||| |||||| |||| |||||| | ||||| |||||| ||||  ||    
7113710 atttttccttgatgaattgaggggtaatttaccgctgatgtcaaatacgattcaattatggaacaaaagagatgtaaatcacatcttaaatgaaggtgat 7113809  T
255 aaagaagtttgatgtttttaaaatgaaaatgataattgattgtaa 299  Q
    |||||| ||||||||  |||  |||||||| ||||||||||||||    
7113810 aaagaaatttgatgtagttatgatgaaaataataattgattgtaa 7113854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 303
Target Start/End: Original strand, 39730394 - 39730519
Alignment:
178 gtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaa 277  Q
    |||||||| ||||| ||||| |||| |||| ||||||||||||| | |||||| |  |||| ||  || ||||| ||||||||||| || |||||||| |    
39730394 gtaatttacccctcatgacatatacaattcgattttggaacgaacgagatgtatattacatcttcgatgaaggagataaagaagttcgaagtttttaaga 39730493  T
278 tgaaaatgataattgattgtaagaag 303  Q
    ||  |||||||| |||||||||||||    
39730494 tggtaatgataactgattgtaagaag 39730519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 973219 - 973114
Alignment:
197 aaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattg 296  Q
    ||||| |||||||||||| || ||| | |||| ||| |||||||| ||||||||| || ||||| ||| |||||||| | || |||||||||| | ||||    
973219 aaatatgattcaattttgtaatgaatgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaattg 973120  T
297 taagaa 302  Q
    ||||||    
973119 taagaa 973114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 2243311 - 2243389
Alignment:
225 gatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaag 303  Q
    |||| ||| |||||||| ||| ||||| || ||||||||||||||| || | ||||||||| ||| | |||||||||||    
2243311 gatggagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaag 2243389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 5205524 - 5205581
Alignment:
216 aacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgttttt 273  Q
    |||||||  |||| ||| |||||||| ||||||||| ||||| |||||||||||||||    
5205524 aacgaaatagatggagatcacatgtttaataaaggagataaaaaagtttgatgttttt 5205581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 7215264 - 7215368
Alignment:
197 aaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattg 296  Q
    ||||| ||||||||||| ||| ||||  |||| ||| ||||| || ||| ||| | | |||||||||||||||| || | ||||||||| || |||||||    
7215264 aaatatgattcaattttagaatgaaaaagatggagatcacatattcaatgaagaaga-aaagaagtttgatgttcttgagatgaaaatggtagttgattg 7215362  T
297 taagaa 302  Q
    ||||||    
7215363 taagaa 7215368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 37077868 - 37077763
Alignment:
197 aaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattg 296  Q
    ||||| |||||||||||| || ||| |  ||  ||| |||||||| ||| ||  |||| ||||| |||||||||||| | ||||||||| ||| ||||||    
37077868 aaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattg 37077769  T
297 taagaa 302  Q
    ||||||    
37077768 taagaa 37077763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 13712867 - 13712987
Alignment:
178 gtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaa 277  Q
    |||||||||||||  |||||||||| |||   ||||||||| |||| |||||||| |||||||||||| ||||| ||||| ||||||||  ||||||| |    
13712867 gtaatttatccctaatgacaaatacaattaggttttggaaccaaagagatgtagatcacatgttaaatgaaggagataaaaaagtttgaaatttttaaga 13712966  T
278 tgaaaatgataattgattgta 298  Q
    | |||||| |||  |||||||    
13712967 taaaaatggtaaccgattgta 13712987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 302
Target Start/End: Complemental strand, 16576552 - 16576420
Alignment:
170 aatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgt 269  Q
    ||||||| ||||||||||  |  ||||||||| ||||||||  || ||||||   |||| |||   |||||||||| ||||| || |||| ||||| |||    
16576552 aatttggggtaatttatctttaatgacaaatatgattcaataatgtaacgaagaagatggagattgcatgttaaatgaaggatatgaagatgtttgttgt 16576453  T
270 ttttaaaatgaaaatgataattgattgtaagaa 302  Q
    |||| ||||||||||||||| ||||||||||||    
16576452 ttttgaaatgaaaatgataaatgattgtaagaa 16576420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 16576390 - 16576251
Alignment:
162 ccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaag 261  Q
    |||||||||||| ||  ||||||| ||||  ||| || || ||||| ||| ||||||||| | || | ||| |||||||| ||| ||||| || ||||||    
16576390 ccttgatgaattgggt-taatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaag 16576292  T
262 tttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||| || | | ||||||| ||||||||||||||||    
16576291 tttgatgttcttgagaggaaaatggtaattgattgtaagaa 16576251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 2909930 - 2909844
Alignment:
197 aaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaa 283  Q
    ||||| ||||||||||| ||| |||    |||||||  ||||||| ||| ||||| || ||||||||||||||||||||||||||||    
2909930 aaataagattcaattttagaatgaagtaaatgtagattacatgttgaatgaaggagatgaagaagtttgatgtttttaaaatgaaaa 2909844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 35371182 - 35371117
Alignment:
234 cacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaa 299  Q
    |||||||||||| |||| || |||||||||||||||| || | ||||||||| ||| |||||||||    
35371182 cacatgttaaatgaaggtaacaaagaagtttgatgttcttgatatgaaaatggtaaatgattgtaa 35371117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 16863545 - 16863459
Alignment:
216 aacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    |||||| | |||||||| ||||| || ||||||| | || ||||| ||||||||| || | ||||||||| ||| ||||||||||||    
16863545 aacgaaggagatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaa 16863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 13712757 - 13712822
Alignment:
237 atgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||| ||||||| | |||||||||||||||||| |||| ||| ||||| ||| |||| |||||||    
13712757 atgttgaataaagaagataaagaagtttgatgttcttaagatggaaatggtaactgatagtaagaa 13712822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 32166608 - 32166707
Alignment:
203 gattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||| |  |||||||| |||| |||  ||||||| ||||||||| || ||||||||||||||| || | |||||||||||||||||| |||||||    
32166608 gattcaattctaaaacgaaagagatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaa 32166707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 32166727 - 32166816
Alignment:
156 atttttccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaat 245  Q
    ||||||| |||||||||| || |||||||| | ||  |||||| |||||||| ||||||||||||||| |||||| | ||||||||||||    
32166727 atttttctttgatgaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaat 32166816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 508
Target Start/End: Original strand, 15805837 - 15805932
Alignment:
413 aaaacataccaaatagatgaaagtcgaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaatagtt 508  Q
    |||||||||| || || |||||||||||||| || ||| ||| ||||||||||||||| |  |||||||| ||||| ||||| || ||||| ||||    
15805837 aaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtt 15805932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 503
Target Start/End: Original strand, 15697845 - 15697935
Alignment:
413 aaaacataccaaatagatgaaagtcgaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaa 503  Q
    |||||||||| || || |||||||| ||||| || || ||||||||||||||||| || | |||||||||  | |||||||| ||||||||    
15697845 aaaacataccgaaaaggtgaaagtcaaggcttgaattcggcatgtattcatatactagtatcttttcatttccttcaatgcagcaacccaa 15697935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 303
Target Start/End: Complemental strand, 33897735 - 33897571
Alignment:
139 tatatcggtgagtctatatttttccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacat 238  Q
    |||||||  ||| ||| ||||||||||||| ||||  ||||||||||   ||  ||| ||| ||||||  ||||| ||||||||  |||||| | |||||    
33897735 tatatcgacgagcctacatttttccttgattaattgagagtaatttacatctgatgataaacacgattagattttagaacgaaaaagatgtaaatcacat 33897636  T
239 gttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaag 303  Q
    ||||||| ||||| ||||     ||| |||||||||| |||||||||||||  |||| |||||||    
33897635 gttaaatgaaggagataattttttttaatgtttttaagatgaaaatgataaccgattataagaag 33897571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 508
Target Start/End: Original strand, 15712267 - 15712365
Alignment:
410 gtgaaaacataccaaatagatgaaagtcgaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaatagtt 508  Q
    ||||||||||||  || || |||||||||||||| || ||| ||||||| || ||||| || | ||||||||| |  |||| |||||||||||| ||||    
15712267 gtgaaaacatactgaaaaggtgaaagtcgaggcttgaattttgcatgtactcgtatactagtatcttttcattttgttcaaagcaacaacccaagagtt 15712365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 37010310 - 37010400
Alignment:
195 acaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatg 285  Q
    ||||||| ||||| ||| ||||| ||| | |||  ||| |||||||||||| || ||||| || ||||||||||||||| | |||||||||    
37010310 acaaatatgattcgattatggaatgaaggagatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatg 37010400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 33897807 - 33897743
Alignment:
235 acatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaa 299  Q
    ||||||| ||| |||||||| ||||| |||||||||||| | ||||||||  |||||||| ||||    
33897807 acatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaattgatagtaa 33897743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 34695908 - 34695832
Alignment:
226 atgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||| |||||||| ||| |||||  | ||||| ||||||  |||| ||| ||||||||||| ||||||||||||    
34695908 atgtagatcacatgttgaatgaaggaggtgaagaaatttgataattttgaaaagaaaatgataactgattgtaagaa 34695832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 284
Target Start/End: Original strand, 44342107 - 44342254
Alignment:
138 ctatatcggtgagtctatatttttccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcaca 237  Q
    ||||||||||||| ||| |||||||||||||||||| ||| |||||| ||| || ||| ||||| ||||  ||||||  ||||||| ||| || | |||     
44342107 ctatatcggtgagcctacatttttccttgatgaattgggaataatttgtccatcatgataaataggatttgattttgatacgaaagggatataaatcacg 44342206  T
238 tgtt-aaataaaggaaataaagaagtttgatgtttttaaaatgaaaat 284  Q
    | || ||||||  || ||||||||| ||||||||||||| ||||||||    
44342207 tcttaaaataatagagataaagaagattgatgtttttaagatgaaaat 44342254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 68198 - 68100
Alignment:
204 attcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    |||| ||||||||||||||  |||| ||| |||||||||||| ||||| || |||||||| |||||| || |||| |||||| ||| | ||||||||||    
68198 attcgattttggaacgaaaaagatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaagaa 68100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 35957125 - 35956986
Alignment:
161 tccttgatgaatttggagtaatttatccctcgtgacaaatacgattcaattttggaacgaaagtgatgtagagcacatgttaaataaaggaaataaagaa 260  Q
    |||||||||||||  ||||||||||  |||| |||||| |    ||| ||||| ||||||||  |||| ||| ||||| ||||||||| |||||  | ||    
35957125 tccttgatgaattgagagtaattta--cctcatgacaacttgagttcgatttttgaacgaaatagatggagatcacatattaaataaaagaaatggaaaa 35957028  T
261 gtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||||||| | || |||||| ||||| ||||||||||    
35957027 gtttgatgtttttgagataaaaatggtaattaattgtaagaa 35956986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 35660808 - 35660763
Alignment:
257 agaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||    
35660808 agaagtttgatgtttttgaaatgaaaatggtaattgattttaagaa 35660763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 24873811 - 24873768
Alignment:
259 aagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||| || |||||||||||||| ||||||||||||||||    
24873811 aagtttgatcttcttaaaatgaaaatggtaattgattgtaagaa 24873768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 24874644 - 24874601
Alignment:
259 aagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||| || |||||||||||||| ||||||||||||||||    
24874644 aagtttgatcttcttaaaatgaaaatggtaattgattgtaagaa 24874601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 10775212 - 10775166
Alignment:
256 aagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    ||||||||||||||| |||| ||||||||| ||||||||| ||||||    
10775212 aagaagtttgatgttcttaagatgaaaatggtaattgattctaagaa 10775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 45967838 - 45967898
Alignment:
242 aaataaaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaa 302  Q
    |||||||||| || ||||| ||| || ||||| |||||||||||||||  |||||||||||    
45967838 aaataaaggagatgaagaaatttaatatttttgaaatgaaaatgataacagattgtaagaa 45967898  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 52432887 - 52432835
Alignment:
251 aaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaag 303  Q
    |||| |||||||||||||||||| | | ||||||||||| | |||||||||||    
52432887 aaatgaagaagtttgatgtttttgagaagaaaatgataactaattgtaagaag 52432835  T

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Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 62744 - 62800
Alignment:
247 aaggaaataaagaagtttgatgtttttaaaatgaaaatgataattgattgtaagaag 303  Q
    ||||| ||||||||||||||||||||||| |||||| |||||| ||||| |||||||    
62744 aaggagataaagaagtttgatgtttttaagatgaaattgataactgattctaagaag 62800  T

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