View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14497_low_7 (Length: 517)
Name: NF14497_low_7
Description: NF14497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14497_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 35921107 - 35921608
Alignment:
| Q |
1 |
gcactcagacgacgaaatcacgaaaaatcaagaaattatttaagagtgtattaaaataataggtgtctaatcatgactttgatatttgattattgtatat |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921107 |
gcactcagacgacgaaatcacgaaaaataaagaaattatttaagagtgtattaaaatcataggtgtctaatcatgactttgatatttgattattgtatat |
35921206 |
T |
|
| Q |
101 |
aa-caaaatagtatagaaagttaatttaattatctcatgaggaatgatttagtttttgcataaaacaaaatttgaatctcttaagcaaacaaggttagac |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35921207 |
aaacaaaatagtatagaaagttaatttaattatctcatgaggaatgatttagtttttgcataaaaccaaatttgaatctcttaagcaaacaaggttagaa |
35921306 |
T |
|
| Q |
200 |
agatagattccacttaatgtggtgagttaaatttctgttaaaattagtcattgataaaattggcggatcctttccttcnnnnnnnnnnnnnntttggtgg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
35921307 |
agatagattccacttaatgtggtgagttaaatttctgttaaaattagtcattgataaaattggtggatcctttccttcaaaaaaaaaaaaaa-atggtgg |
35921405 |
T |
|
| Q |
300 |
atccttcaaacttttacatatttttgacaaaaaatatgcaaccactaaggcaagggtcggtggtccaagtttttaaaaatggcaaacattctgacaatta |
399 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921406 |
atccttcatactttta-atatttttgacaaaaaatatgcaaccactaaggcaagggtcggtggtccaagtttttaaaaatggcaaacattctgacaatta |
35921504 |
T |
|
| Q |
400 |
tatataatagaactagaatcacaatctcataatctaggaagacaaatttcaaggcactgttgaattgttggttacatgtgtggtaagttaccaaaagtat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921505 |
tatataatagaactagaatcacaatctcataatctaggaagacaaatttcaaggcactgttgaattgttggttacatgtgtggtaagttaccaaaagtat |
35921604 |
T |
|
| Q |
500 |
atgt |
503 |
Q |
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|||| |
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| T |
35921605 |
atgt |
35921608 |
T |
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