View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14498_high_1 (Length: 434)

Name: NF14498_high_1
Description: NF14498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14498_high_1
NF14498_high_1
[»] scaffold0428 (5 HSPs)
scaffold0428 (9-434)||(11747-12172)
scaffold0428 (19-215)||(4070-4266)
scaffold0428 (271-346)||(5615-5690)
scaffold0428 (62-108)||(12849-12895)
scaffold0428 (229-273)||(3750-3794)
[»] chr6 (23 HSPs)
chr6 (9-434)||(33282080-33282505)
chr6 (219-428)||(33397886-33398096)
chr6 (219-428)||(33408797-33409006)
chr6 (228-371)||(33283873-33284018)
chr6 (19-153)||(33260069-33260200)
chr6 (272-370)||(33387358-33387456)
chr6 (22-214)||(33385694-33385895)
chr6 (127-211)||(33259985-33260069)
chr6 (271-371)||(33261817-33261917)
chr6 (19-94)||(33416581-33416656)
chr6 (164-211)||(33355463-33355510)
chr6 (21-108)||(33397055-33397145)
chr6 (162-215)||(33416479-33416532)
chr6 (62-108)||(33281357-33281403)
chr6 (62-108)||(33408005-33408051)
chr6 (232-273)||(9165229-9165270)
chr6 (240-273)||(31564846-31564879)
chr6 (232-273)||(33385360-33385401)
chr6 (405-434)||(33387224-33387253)
chr6 (237-273)||(24632079-24632115)
chr6 (125-205)||(31564378-31564458)
chr6 (229-273)||(33259629-33259673)
chr6 (341-380)||(33358142-33358182)
[»] chr2 (3 HSPs)
chr2 (22-215)||(17443313-17443514)
chr2 (271-366)||(17441585-17441680)
chr2 (377-434)||(17441728-17441785)


Alignment Details
Target: scaffold0428 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Original strand, 11747 - 12172
Alignment:
Q  9 gaagaatattatcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11747 gaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 11846  T
Q  109 tnnnnnnnnngaagtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcat 208  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11847 taaaaaaaaagaagtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcat 11946  T
Q  209 atttcaaactaggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947 atttcaaactaggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatct 12046  T
Q  309 ctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatattttaatttttagactgaattttatgatttaccgagtgg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12047 ctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatattttaatttttagactgaattttatgatttaccgagtgg 12146  T
Q  409 gggttttaaatttgtgttaggttgta 434  Q
    ||||||||||||||||||||||||||    
T  12147 gggttttaaatttgtgttaggttgta 12172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 4266 - 4070
Alignment:
Q  19 atcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnn 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||             
T  4266 atcaagttcccactcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcatcacaagttgaagaagttgcaattgcattaaaaaaaaa 4167  T
Q  119 gaagtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  4166 gaagtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttacaatttcatcttattttcttcgtatttcaa 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 5690 - 5615
Alignment:
Q  271 gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattc 346  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5690 gtcaacaagtgataacaagtcaaacgcaaaaacaatctctgttttcaaccgcaagcagaggtactgaagataattc 5615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 12849 - 12895
Alignment:
Q  62 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 108  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  12849 agaacaaacacctgtcgcagcacaggttgaagaggttgcaattgcat 12895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 3794 - 3750
Alignment:
Q  229 acatatcgttgaattcttacataagatttctaatttttaaatgtc 273  Q
    ||||||| ||||||||||||||||||||| || || |||||||||    
T  3794 acatatctttgaattcttacataagatttatagttgttaaatgtc 3750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Complemental strand, 33282505 - 33282080
Alignment:
Q  9 gaagaatattatcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33282505 gaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcaacacaagttgaagaagttgcaattgcat 33282406  T
Q  109 tnnnnnnnnngaagtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcat 208  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282405 taaaaaaaaagaagtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcat 33282306  T
Q  209 atttcaaactaggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282305 atttcaaactaggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatct 33282206  T
Q  309 ctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatattttaatttttagactgaattttatgatttaccgagtgg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282205 ctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatattttaatttttagactgaattttatgatttaccgagtgg 33282106  T
Q  409 gggttttaaatttgtgttaggttgta 434  Q
    ||||||||||||||||||||||||||    
T  33282105 gggttttaaatttgtgttaggttgta 33282080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 219 - 428
Target Start/End: Complemental strand, 33398096 - 33397886
Alignment:
Q  219 aggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  33398096 aggagtttggacatatcgttgaattcttacataagatttataatttttaaatgtcaacaagtgataacaagttgaccgcaaaaacaatctttgttgtcaa 33397997  T
Q  319 ctgcaagcagaggtactgaagataattcaaaagaattttgttaactttatatt-ttaatttttagactgaattttatgatttaccgagtgggggttttaa 417  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||||||    
T  33397996 ccgctagcagaggtactgaagataattcaaaagaattttgttaactttatattattattttttagactgaattttatgatttacggggtgggggttttaa 33397897  T
Q  418 atttgtgttag 428  Q
    |||||||||||    
T  33397896 atttgtgttag 33397886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 219 - 428
Target Start/End: Complemental strand, 33409006 - 33408797
Alignment:
Q  219 aggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||    
T  33409006 aggagtttggacatatcgttgaattcttacataagatttataatttttaaatgtcaacaagtgataacaagtcgaccggaaaaacaatctttgttgtcaa 33408907  T
Q  319 ctgcaagcagaggtactgaagataattcaaaagaattttgttaactttatatt-ttaatttttagactgaattttatgatttaccgagtgggggttttaa 417  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| | |||||||||||||    
T  33408906 ccgctagcagaggtactgaagataattcaaaagaattttgttaactttatattattattttttagactg-attttatgatttacggggtgggggttttaa 33408808  T
Q  418 atttgtgttag 428  Q
    |||||||||||    
T  33408807 atttgtgttag 33408797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 228 - 371
Target Start/End: Complemental strand, 33284018 - 33283873
Alignment:
Q  228 gacatatcgttgaattcttacataagatttctaatttttaaat--gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaag 325  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33284018 gacatatcgttgaattcttacataaaatttctaatttttaaatatgtcaagaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaag 33283919  T
Q  326 cagaggtactgaagataattcaaaagaattttgttaactttatatt 371  Q
    ||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  33283918 cagcggtactgaagataattcaaaagaatcttgttaattttatatt 33283873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 33260200 - 33260069
Alignment:
Q  19 atcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnn 118  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  33260200 atcaagttccctctcctgaaagccctgcaaccgaagaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattaaaaaaa-- 33260103  T
Q  119 gaagtgtatctaactctaatagacaaactggcatt 153  Q
     |||||||||||||||||| |||||||||||||||    
T  33260102 -aagtgtatctaactctaacagacaaactggcatt 33260069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 33387456 - 33387358
Alignment:
Q  272 tcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatat 370  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  33387456 tcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatat 33387358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 33385895 - 33385694
Alignment:
Q  22 aagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagtt------gaagaagttgcaattgcatt---nnn 112  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||          
T  33385895 aagttccctctcctgaaagtcctccaactgaagaagtgccagaacaaacaccagtagcagtacaagttgaaggtgaagaagttgcaattgcattaaaaaa 33385796  T
Q  113 nnnnnngaagtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatattt 212  Q
            || ||||||||||||||| ||||||| || |||||| | | |||||||||| |||||||||||||||||||||||||||||  |||||||||    
T  33385795 caaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatattt 33385696  T
Q  213 ca 214  Q
    ||    
T  33385695 ca 33385694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 33260069 - 33259985
Alignment:
Q  127 tctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatt 211  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33260069 tctaactctaacagacaaactggcattacaactttagatgaagtcctgagcaaaggttgcaatttcatcttatttgcttcatatt 33259985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 33261917 - 33261817
Alignment:
Q  271 gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatat 370  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  33261917 gtcaacaagtgataacaagtcaaacgcaaaaacaatctctgttttcaaccgcaagcagaggtactgaagataattcaaaagaatcttgttaattttatat 33261818  T
Q  371 t 371  Q
    |    
T  33261817 t 33261817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 33416656 - 33416581
Alignment:
Q  19 atcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagttgaaga 94  Q
    ||||||||||||||||||||||||||||  ||||||| |||| |||||||||||| ||| ||||||||||||||||    
T  33416656 atcaagttccctctcctgaaagtcctgccactgaagaggtgcaagaacaaacacctgtatcagcacaagttgaaga 33416581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 33355510 - 33355463
Alignment:
Q  164 atgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatt 211  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  33355510 atgaaagccggagcaaaggttgcaatttcatcttatttgcttcatatt 33355463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 33397145 - 33397055
Alignment:
Q  21 caagttccctctcctgaaagtcctgcacctgaagaagtgc---cagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 108  Q
    ||||||||||||||||||||||||||  ||||||||||||    |||||||| ||| ||  | | |||||||||||| |||||||||||||    
T  33397145 caagttccctctcctgaaagtcctgccactgaagaagtgcaagaagaacaaatacctgtcaccgtacaagttgaagaggttgcaattgcat 33397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 33416532 - 33416479
Alignment:
Q  162 agatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaa 215  Q
    ||||||||||  ||| ||||||| | ||||||||||||||||||||||||||||    
T  33416532 agatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaa 33416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 33281403 - 33281357
Alignment:
Q  62 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 108  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  33281403 agaacaaacacctgtcgcagcacaggttgaagaggttgcaattgcat 33281357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 33408051 - 33408005
Alignment:
Q  62 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 108  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  33408051 agaacaaacacctgtcgcagcacatgttgaagaggttgcaattgcat 33408005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 9165270 - 9165229
Alignment:
Q  232 tatcgttgaattcttacataagatttctaatttttaaatgtc 273  Q
    |||| ||||||| ||||||||||||||||||| |||||||||    
T  9165270 tatctttgaatttttacataagatttctaattgttaaatgtc 9165229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 31564846 - 31564879
Alignment:
Q  240 aattcttacataagatttctaatttttaaatgtc 273  Q
    ||||||||||||||||||||| ||||||||||||    
T  31564846 aattcttacataagatttctattttttaaatgtc 31564879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 33385401 - 33385360
Alignment:
Q  232 tatcgttgaattcttacataagatttctaatttttaaatgtc 273  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  33385401 tatctttgaattcttacataagatttctaatcgttaaatgtc 33385360  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 434
Target Start/End: Complemental strand, 33387253 - 33387224
Alignment:
Q  405 gtgggggttttaaatttgtgttaggttgta 434  Q
    ||||||||||||||||||||||||||||||    
T  33387253 gtgggggttttaaatttgtgttaggttgta 33387224  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 24632079 - 24632115
Alignment:
Q  237 ttgaattcttacataagatttctaatttttaaatgtc 273  Q
    |||||||| |||||||||||||||||| |||||||||    
T  24632079 ttgaattcctacataagatttctaattgttaaatgtc 24632115  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 31564378 - 31564458
Alignment:
Q  125 tatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgctt 205  Q
    ||||||| |||||| ||||||| ||||||||  ||| |||  |||||  ||| || |||| ||||||||||||||||||||    
T  31564378 tatctaattctaatggacaaaccggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctt 31564458  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 33259673 - 33259629
Alignment:
Q  229 acatatcgttgaattcttacataagatttctaatttttaaatgtc 273  Q
    ||||||| ||||||||||||||||||||| || || |||||||||    
T  33259673 acatatctttgaattcttacataagatttatagttgttaaatgtc 33259629  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 33358182 - 33358142
Alignment:
Q  341 taattcaaaagaattttgttaactttatatt-ttaattttt 380  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  33358182 taattcaaaagaatcttgttaactttatattattaattttt 33358142  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 17443313 - 17443514
Alignment:
Q  22 aagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacaccagtagcagcacaagttgaa------gaagttgcaattgcattnnnnnn 115  Q
    |||||| ||||||||||||||||||| |  |||||||||||||||||||||||| ||| ||||||||||||      |||||||||||||||||          
T  17443313 aagttctctctcctgaaagtcctgcaaccaaagaagtgccagaacaaacaccagcagcggcacaagttgaacgtgaagaagttgcaattgcatttgaaac 17443412  T
Q  116 nnngaa--gtgtatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttc 213  Q
        ||  | ||||||||||||||| |||||||  |||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  17443413 aaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttgaccaaaggttgcaatttcatcttatttgcttcaaatttc 17443512  T
Q  214 aa 215  Q
    ||    
T  17443513 aa 17443514  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 17441585 - 17441680
Alignment:
Q  271 gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaacttt 366  Q
    ||||||||||| |||||| ||||| |||| |||||||||||||||||||  |||||| |||||| ||||||||||||||| ||| |||||||||||    
T  17441585 gtcaacaagtgataacaaatcaactgcaacaacaatctctgttgtcaacaacaagcaaaggtacggaagataattcaaaaaaatcttgttaacttt 17441680  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 434
Target Start/End: Original strand, 17441728 - 17441785
Alignment:
Q  377 ttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgta 434  Q
    |||||||||||||||||| |||| | | |||||||||||||||||||||| |||||||    
T  17441728 ttttagactgaattttataatttgcggggtgggggttttaaatttgtgtttggttgta 17441785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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