View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14498_low_1 (Length: 460)

Name: NF14498_low_1
Description: NF14498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14498_low_1
NF14498_low_1
[»] chr1 (30 HSPs)
chr1 (1-460)||(9629908-9630376)
chr1 (1-95)||(36878417-36878512)
chr1 (1-75)||(398773-398847)
chr1 (8-95)||(14359537-14359623)
chr1 (6-95)||(5898279-5898368)
chr1 (6-75)||(16927198-16927267)
chr1 (1-52)||(38503320-38503371)
chr1 (1-75)||(7918219-7918293)
chr1 (13-75)||(20157370-20157432)
chr1 (1-74)||(1486717-1486790)
chr1 (13-74)||(17754289-17754350)
chr1 (6-75)||(34298413-34298482)
chr1 (1-49)||(52903252-52903300)
chr1 (13-52)||(2896141-2896180)
chr1 (13-52)||(9828044-9828083)
chr1 (14-57)||(11605956-11605999)
chr1 (1-52)||(17425101-17425152)
chr1 (8-98)||(24577201-24577292)
chr1 (1-52)||(25098563-25098614)
chr1 (8-95)||(27471581-27471668)
chr1 (8-95)||(28273103-28273190)
chr1 (1-51)||(6427351-6427401)
chr1 (19-53)||(22781441-22781475)
chr1 (6-52)||(40181871-40181917)
chr1 (14-51)||(2851022-2851059)
chr1 (6-54)||(48148050-48148099)
chr1 (8-52)||(113299-113343)
chr1 (19-75)||(5927366-5927422)
chr1 (1-53)||(34371713-34371764)
chr1 (8-52)||(46348398-46348442)
[»] chr6 (33 HSPs)
chr6 (1-72)||(10888982-10889053)
chr6 (1-75)||(7086772-7086846)
chr6 (7-75)||(8805586-8805654)
chr6 (4-75)||(7625099-7625170)
chr6 (1-52)||(17341672-17341723)
chr6 (1-52)||(19040352-19040403)
chr6 (1-72)||(30866152-30866223)
chr6 (1-96)||(32511674-32511769)
chr6 (17-95)||(2117034-2117111)
chr6 (1-51)||(7265601-7265651)
chr6 (6-52)||(7996391-7996437)
chr6 (6-52)||(8022364-8022410)
chr6 (1-75)||(13851713-13851787)
chr6 (6-51)||(1532241-1532286)
chr6 (6-75)||(3398596-3398664)
chr6 (6-75)||(9658856-9658925)
chr6 (8-93)||(16833267-16833352)
chr6 (1-57)||(9025502-9025558)
chr6 (1-52)||(7938116-7938167)
chr6 (8-95)||(10770689-10770776)
chr6 (1-52)||(20371118-20371169)
chr6 (6-53)||(32320682-32320729)
chr6 (16-66)||(7723273-7723323)
chr6 (1-75)||(9027155-9027229)
chr6 (8-86)||(12696290-12696368)
chr6 (1-51)||(13689500-13689550)
chr6 (1-95)||(19147799-19147893)
chr6 (8-74)||(25038086-25038152)
chr6 (13-51)||(34447378-34447416)
chr6 (5-45)||(8389484-8389524)
chr6 (8-52)||(16766697-16766741)
chr6 (7-51)||(31579239-31579283)
chr6 (8-95)||(34595090-34595178)
[»] chr7 (22 HSPs)
chr7 (1-75)||(21140990-21141064)
chr7 (6-75)||(5235963-5236032)
chr7 (1-94)||(15902780-15902873)
chr7 (15-75)||(26733281-26733341)
chr7 (1-72)||(20549771-20549842)
chr7 (1-63)||(17851420-17851482)
chr7 (7-52)||(29787383-29787428)
chr7 (1-66)||(42720898-42720963)
chr7 (1-72)||(3520350-3520421)
chr7 (1-52)||(5548676-5548727)
chr7 (13-52)||(32308120-32308159)
chr7 (17-75)||(19206027-19206085)
chr7 (1-75)||(49107798-49107871)
chr7 (8-61)||(11831423-11831476)
chr7 (7-44)||(11890933-11890970)
chr7 (8-45)||(13300417-13300454)
chr7 (7-56)||(14729697-14729746)
chr7 (7-47)||(2424619-2424659)
chr7 (16-91)||(11722121-11722197)
chr7 (8-52)||(23191896-23191940)
chr7 (8-52)||(24339642-24339686)
chr7 (8-52)||(25481902-25481946)
[»] chr3 (23 HSPs)
chr3 (5-66)||(23870571-23870632)
chr3 (8-102)||(26508060-26508154)
chr3 (1-52)||(8383257-8383308)
chr3 (1-51)||(17005627-17005677)
chr3 (18-66)||(15544679-15544727)
chr3 (6-66)||(29112293-29112353)
chr3 (1-52)||(7928450-7928501)
chr3 (1-80)||(11658787-11658866)
chr3 (8-95)||(26492220-26492307)
chr3 (1-72)||(34307788-34307859)
chr3 (1-51)||(8039843-8039893)
chr3 (1-45)||(29508451-29508495)
chr3 (1-51)||(1550141-1550191)
chr3 (6-52)||(10690275-10690321)
chr3 (1-75)||(11665921-11665995)
chr3 (15-65)||(21257008-21257058)
chr3 (1-62)||(16192758-16192819)
chr3 (1-46)||(25948895-25948940)
chr3 (1-66)||(49505162-49505227)
chr3 (8-52)||(4987306-4987350)
chr3 (8-44)||(15796309-15796345)
chr3 (7-75)||(25064886-25064954)
chr3 (13-53)||(51206373-51206413)
[»] chr8 (21 HSPs)
chr8 (1-74)||(24362210-24362283)
chr8 (1-66)||(34897071-34897136)
chr8 (1-75)||(12570516-12570590)
chr8 (8-86)||(24669399-24669477)
chr8 (1-46)||(3025557-3025602)
chr8 (13-53)||(18067954-18067994)
chr8 (6-66)||(39954292-39954352)
chr8 (8-75)||(4673440-4673507)
chr8 (8-75)||(8343293-8343360)
chr8 (1-44)||(11927094-11927137)
chr8 (1-52)||(12606837-12606888)
chr8 (6-52)||(4611534-4611580)
chr8 (1-75)||(36934647-36934721)
chr8 (1-75)||(39820406-39820480)
chr8 (1-66)||(3658133-3658198)
chr8 (6-67)||(12570747-12570808)
chr8 (8-53)||(25566840-25566885)
chr8 (17-53)||(18069155-18069191)
chr8 (1-69)||(20679403-20679471)
chr8 (6-94)||(29775994-29776082)
chr8 (6-70)||(34201059-34201123)
[»] chr2 (27 HSPs)
chr2 (1-49)||(34691813-34691861)
chr2 (1-49)||(34714225-34714273)
chr2 (8-75)||(12940950-12941017)
chr2 (1-52)||(37411252-37411303)
chr2 (1-75)||(21616739-21616813)
chr2 (8-75)||(20539689-20539756)
chr2 (1-72)||(23718006-23718077)
chr2 (1-72)||(24105678-24105749)
chr2 (8-95)||(30404865-30404952)
chr2 (1-95)||(27286300-27286394)
chr2 (6-52)||(28677909-28677955)
chr2 (13-66)||(29970569-29970622)
chr2 (1-66)||(31808063-31808128)
chr2 (7-75)||(21782832-21782900)
chr2 (7-51)||(28412351-28412395)
chr2 (1-53)||(44860319-44860371)
chr2 (13-60)||(22084852-22084899)
chr2 (13-52)||(24975345-24975384)
chr2 (15-52)||(1327978-1328015)
chr2 (7-52)||(16069268-16069313)
chr2 (7-52)||(18276521-18276566)
chr2 (1-74)||(36756352-36756425)
chr2 (17-49)||(6045940-6045972)
chr2 (16-52)||(8950338-8950374)
chr2 (1-45)||(18622613-18622657)
chr2 (6-50)||(25080902-25080946)
chr2 (8-52)||(39323264-39323308)
[»] chr4 (21 HSPs)
chr4 (16-66)||(56488533-56488583)
chr4 (6-95)||(22440613-22440702)
chr4 (3-93)||(7012025-7012115)
chr4 (6-52)||(8423731-8423777)
chr4 (7-57)||(56257928-56257978)
chr4 (6-46)||(35952630-35952670)
chr4 (1-52)||(3712517-3712568)
chr4 (37-72)||(35160982-35161017)
chr4 (1-52)||(40613450-40613501)
chr4 (1-75)||(14126119-14126193)
chr4 (1-75)||(24343484-24343558)
chr4 (1-51)||(36635325-36635375)
chr4 (6-72)||(40179649-40179715)
chr4 (8-57)||(28964263-28964312)
chr4 (6-50)||(903924-903968)
chr4 (7-51)||(16189710-16189754)
chr4 (8-95)||(21945459-21945547)
chr4 (6-46)||(30838216-30838256)
chr4 (8-52)||(38847027-38847071)
chr4 (8-95)||(49430982-49431070)
chr4 (1-45)||(54580031-54580075)
[»] scaffold0022 (1 HSPs)
scaffold0022 (6-75)||(90820-90889)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-74)||(135320-135393)
[»] chr5 (25 HSPs)
chr5 (1-49)||(5467986-5468034)
chr5 (6-69)||(12927637-12927700)
chr5 (1-52)||(28588682-28588733)
chr5 (6-59)||(10022625-10022678)
chr5 (1-53)||(6471897-6471949)
chr5 (3-75)||(14574059-14574131)
chr5 (1-69)||(39205863-39205931)
chr5 (1-52)||(3966503-3966554)
chr5 (13-52)||(23220983-23221022)
chr5 (1-72)||(27144443-27144514)
chr5 (8-75)||(42488068-42488135)
chr5 (6-56)||(17593735-17593785)
chr5 (1-75)||(25863181-25863255)
chr5 (1-51)||(30502396-30502446)
chr5 (1-51)||(30542739-30542789)
chr5 (8-66)||(39698527-39698585)
chr5 (1-95)||(2436878-2436973)
chr5 (19-72)||(7175045-7175098)
chr5 (13-66)||(19438329-19438382)
chr5 (1-75)||(23015997-23016073)
chr5 (1-54)||(25817493-25817546)
chr5 (13-50)||(34879352-34879389)
chr5 (8-52)||(21191071-21191115)
chr5 (8-52)||(27932235-27932279)
chr5 (1-53)||(32630743-32630795)
[»] scaffold1528 (1 HSPs)
scaffold1528 (13-74)||(1013-1074)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-53)||(44533-44585)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-60)||(68250-68309)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-95)||(241550-241639)
[»] scaffold0223 (1 HSPs)
scaffold0223 (8-52)||(20172-20216)
[»] scaffold0103 (1 HSPs)
scaffold0103 (8-52)||(51811-51855)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-49)||(53183-53231)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-52)||(92807-92851)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 9629908 - 9630376
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatagtgtgt 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| |||||||||||||||||||    
T  9629908 acacttataatcacactgaattatatgattttatcaaattattagcggtgtcgatgtgtcggtgtccatgtcgtggccgtatccgtgcttcatagtgtgt 9630007  T
Q  101 aatcagaaaaaa---------gattaagttaccttaatagtgaacaagtatagcatggtttcatcagcagtattaactctaacatgaacaatctcaagcc 191  Q
    || |||||||||         |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630008 aaccagaaaaaaatacacaaagattaagttaccttaatagtaaacaagtatagcatggtttcatcagcagtattaactctaacatgaacaatctcaagcc 9630107  T
Q  192 ttagatcttcaagaacagacattattctaagagcctgccccggaattcgcgacgaaacggttttcaaaagcacatgtgaaccacaaaacttaacctcaac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630108 ttagatcttcaagaacagacattattctaagagcctgccccggaattcgtgacgaaacggttttcaaaagcacatgtgaaccacaaaacttaacctcaac 9630207  T
Q  292 atcagcaaccgaagacgttgaatttccgacaagttcgttgatgttgtcgttgatcgaagaagctgaagaagttggagatggctcagatgaaaggtaacca 391  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630208 atcagcaaccaaagacgttgaatttccgacaagttcgttgatgttgtcgttgatcgaagaagctgaagaagttggagatggctcagatgaaaggtaacca 9630307  T
Q  392 ccacattgttgcaaccattggtatggagttcttggactaattgggaagattattctaggacttggtggt 460  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9630308 ccacattgttgcaaccattgggatggagttcttggactaattgggaagattattctaggacttggtggt 9630376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 36878512 - 36878417
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgt-cgtggccgtctccgtgcttcatag 95  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||   ||||| |||||| ||| |||| |||| ||||||||||||||    
T  36878512 acacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccgtgtccgtatccgtgcttcatag 36878417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 398773 - 398847
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||   ||||| ||||| ||||||||    
T  398773 acacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtg 398847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 14359537 - 14359623
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| ||||| |||||| ||||||| ||||||||||||| |||||   ||||| |||||||||||||| |||| ||||||||||||||    
T  14359537 taattacactaaattatgtgatttt-tcaaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcatag 14359623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 5898279 - 5898368
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||||| |||||||||||| ||||||| ||| |||||||||||||||   || || ||||||||||| || |||| |||||||| |||||    
T  5898279 tataattacactgaattatgtgattttttcagattattagcggtgtcggcgtctcagtgtctgtgtcatgtccgtatccgtgctacatag 5898368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 16927198 - 16927267
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||| |||||||||||||||||||| |||||||||||||  || | | ||||| ||||||||||||||    
T  16927198 tataattacactgaattatatgattttttcaaattattagctatgccgacgtgtcagtgtctgtgtcgtg 16927267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38503371 - 38503320
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||| ||||||||||| |||||||||||||||||||    
T  38503371 acacatataattacactgaaatatatgattttctcaaattattagcggtgtc 38503320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7918219 - 7918293
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||| | |||||  |||||  |||||||||||||    
T  7918219 acacatataattacactgaattatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtg 7918293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 20157370 - 20157432
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||||||||| ||||||| ||| ||||||||||||||| ||||||| ||| | ||||||||    
T  20157370 acactgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtg 20157432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1486717 - 1486790
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 74  Q
    |||| |||||| |||||||||||| ||||||| ||||||||||||| ||||||  ||||| || || |||||||    
T  1486717 acacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgt 1486790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 17754350 - 17754289
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 74  Q
    |||||||||||| | ||||| |||||||||||||||||||  |||||| | |||||||||||    
T  17754350 acactgaattatgtaattttttcaaattattagcggtgtcggtgtgtcagcgtctgtgtcgt 17754289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 34298482 - 34298413
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||| |||||||||||| ||||||| |||||||||||| ||||||  |||||| || || ||||||||    
T  34298482 tataattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtg 34298413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52903300 - 52903252
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggt 49  Q
    |||| |||||| |||||||||||||||||||||| ||||||||| ||||    
T  52903300 acacatataattacactgaattatatgattttattaaattattaacggt 52903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 2896141 - 2896180
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  2896141 acactgaattatgtgattttctcaaattattagcggtgtc 2896180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 9828083 - 9828044
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  9828083 acactgaattatgtgattttatcaaattattagtggtgtc 9828044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 11605956 - 11605999
Alignment:
Q  14 cactgaattatatgattttatcaaattattagcggtgtcaatgt 57  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||    
T  11605956 cactgaattatatgattttttcaaattattagcgatgtcgatgt 11605999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17425101 - 17425152
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| ||| |||||||| ||||||||||||||||||| |||||||    
T  17425101 acacatataattacattgaattatgtgattttatcaaattattatcggtgtc 17425152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 24577201 - 24577292
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc-tgtgtcgtggccgtctccgtgcttcatagtgt 98  Q
    |||| |||||||||||| ||||||| ||||||||||||  ||||||  ||||| ||||| |||   ||| |||| |||||||||||||||||    
T  24577201 taattacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtcgtgttcagtgtccgtatccgtgcttcatagtgt 24577292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25098563 - 25098614
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||||| ||||||| ||||||||| |||||||||    
T  25098563 acacatataattacactgaattatgtgattttctcaaattatcagcggtgtc 25098614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 27471581 - 27471668
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| |||||||||||| || |||| |||||||||||||||| ||  |||||| |||| ||||||| | |||| |  |||||||||||    
T  27471581 taattacactgaattatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtttgtgtcgcgtccgtatatgtgcttcatag 27471668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 28273103 - 28273190
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| |||||||||||||||||||| |||||| |||||  ||||||   |||| |||||  |||| || |||| ||||||||||||||    
T  28273103 taattacactgaattatatgattttttcaaatgattagttgtgtcagcatgtcagtgtccttgtcatgtccgtatccgtgcttcatag 28273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6427401 - 6427351
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 22781475 - 22781441
Alignment:
Q  19 aattatatgattttatcaaattattagcggtgtca 53  Q
    |||||||||||||||| ||||||||||||||||||    
T  22781475 aattatatgattttataaaattattagcggtgtca 22781441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 40181917 - 40181871
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||| |||||||||||| ||||||| ||||||||||||| |||||    
T  40181917 tataattacactgaattatgtgattttctcaaattattagcagtgtc 40181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 2851059 - 2851022
Alignment:
Q  14 cactgaattatatgattttatcaaattattagcggtgt 51  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  2851059 cactgaattatgtaattttatcaaattattagcggtgt 2851022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 48148050 - 48148099
Alignment:
Q  6 tataatcacactgaattatatga-ttttatcaaattattagcggtgtcaa 54  Q
    |||||| |||||||||||||||| |||| | |||||||||||||||||||    
T  48148050 tataattacactgaattatatgatttttttaaaattattagcggtgtcaa 48148099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 113343 - 113299
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  113343 taattacactgaattatgtgattttttcaaattattagctgtgtc 113299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 5927366 - 5927422
Alignment:
Q  19 aattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||||||||||| ||||||||||||| |||| |  ||||| ||||| ||||||||    
T  5927366 aattatatgattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtg 5927422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34371764 - 34371713
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||| |||||| |||||||||||| ||||||| || |||||||||||||||||    
T  34371764 acacatataattacactgaattatgtgattttctc-aattattagcggtgtca 34371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 46348398 - 46348442
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| ||||| |||||||||||||| ||||||||||||| |||||    
T  46348398 taattacactaaattatatgattttttcaaattattagctgtgtc 46348442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10888982 - 10889053
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  10888982 acacatataatcacactaaattatgtgattttatcaaattattagcggtgtctatgtgtcggtgtccgtgtc 10889053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7086846 - 7086772
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| ||||| |||||| ||||||| ||||||||||||| ||| | | ||||||||||||||||||||    
T  7086846 acacatataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtg 7086772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 8805586 - 8805654
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    ||||| ||||| |||||| ||||||| ||||||||||||| ||| | | ||||||||||||||||||||    
T  8805586 ataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtg 8805654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 7625170 - 7625099
Alignment:
Q  4 cctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||||| | ||| |||||||| ||||| ||||||||||| | ||||| | ||||||||||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtgtcgtg 7625099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17341672 - 17341723
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||||| ||||||||||||||||||| |||||||    
T  17341672 acacttataattacactgaattatgtgattttatcaaattattaacggtgtc 17341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19040403 - 19040352
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  19040403 acacatataattacactgaattatgtgattttctcaaattattagcggtgtc 19040352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 30866152 - 30866223
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||| ||| |||||||| ||||||| ||||||||||||||||||   |||||||||||| |||||    
T  30866152 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtc 30866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 32511674 - 32511769
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatagt 96  Q
    |||| |||||| |||||||||||| ||||||| | ||||||||||||||||||  | | |  |||||||||| || | || |||||||||||||||    
T  32511674 acacttataattacactgaattatgtgattttcttaaattattagcggtgtcagaggggcaatgtctgtgtcatgtcggtatccgtgcttcatagt 32511769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 2117111 - 2117034
Alignment:
Q  17 tgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||||||| ||||||| |||||||||||| ||||||   ||||| || || |||||||| |||||||||||||||||||    
T  2117111 tgaattatgtgattttttcaaattattagaggtgtcggagtgtccgtatc-gtgtcgtgtccgtctccgtgcttcatag 2117034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7265601 - 7265651
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| |||||||||||| ||||||| ||||||||||||||||||    
T  7265601 acacatataattacactgaattatgtgattttctcaaattattagcggtgt 7265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 7996391 - 7996437
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||    
T  7996391 tataattacactgaattatatgattttctcaaattattagcagtgtc 7996437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 8022410 - 8022364
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||    
T  8022410 tataattacactgaattatatgattttctcaaattattagcagtgtc 8022364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13851787 - 13851713
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| |||||||||||  | ||||| ||||||||||||||||||| | ||||| ||||| ||||||||    
T  13851787 acacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtg 13851713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 1532286 - 1532241
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||    
T  1532286 tataattacactgaattatgtaattttatcaaattattagcggtgt 1532241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 3398664 - 3398596
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||   ||||| ||||| ||||||||    
T  3398664 tataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtg 3398596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 9658925 - 9658856
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||| |||||||||||| ||||||| | |||||||||||||||||   ||||| ||||| ||||||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtg 9658856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 16833352 - 16833267
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcat 93  Q
    |||| |||||||| ||| ||||||| ||||||||||||  |||||   ||||| |||||||||||||| |||| || |||||||||    
T  16833352 taattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccgtatcagtgcttcat 16833267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9025502 - 9025558
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgt 57  Q
    |||| |||||| |||||||||||| ||||||| ||||||||||||| ||||| ||||    
T  9025502 acacatataattacactgaattatgtgattttctcaaattattagcagtgtccatgt 9025558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7938167 - 7938116
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| ||||| |||||||||||||| ||||||||||||| |||||    
T  7938167 acacttataattacactaaattatatgattttttcaaattattagctgtgtc 7938116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10770689 - 10770776
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| |||||||||||| ||||||| ||||||||||||  ||||    ||||| |||||  ||||||| |||| ||||||||||||||    
T  10770689 taattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtatccgtgcttcatag 10770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20371118 - 20371169
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||| ||| |||| ||||||| |||||||||||||||||||    
T  20371118 acacatataatcacattgagttatgtgattttctcaaattattagcggtgtc 20371169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 32320682 - 32320729
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||||| ||| |||||||| ||||||||||||||||||| ||||||||    
T  32320682 tataatgacattgaattatgtgattttatcaaattattaacggtgtca 32320729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 7723273 - 7723323
Alignment:
Q  16 ctgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    ||||||||||||||||| ||||||||||||| ||||| | ||||| |||||    
T  7723273 ctgaattatatgattttctcaaattattagcagtgtccacgtgtcagtgtc 7723323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9027229 - 9027155
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| |||| ||||||| ||||| | |||||||||||||||||||   ||||| ||||| ||||||||    
T  9027229 acacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtg 9027155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 12696368 - 12696290
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgt 86  Q
    |||| |||||||||||| | ||||| ||||||||||||| |||||   ||||| ||||| |||||||| |||| |||||    
T  12696368 taattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgtgtccgt 12696290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13689500 - 13689550
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| ||||  |||| ||||||||||||||||||||||||||||    
T  13689500 acacgtataattacacgaaattgtatgattttatcaaattattagcggtgt 13689550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19147893 - 19147799
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| |||||| || ||||  ||||||||||| | ||||||||| |||||||  ||||||  ||||||||||||| | |  ||||||||||||||    
T  19147893 acacatataattactctgatctatatgattttcttaaattattaacggtgtctttgtgtcactgtctgtgtcgtgtctgcatccgtgcttcatag 19147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 25038086 - 25038152
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 74  Q
    |||| ||||| |||||| | ||||| ||||||||||| ||||||||| ||||| || ||||||||||    
T  25038086 taattacactaaattatgtaattttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgt 25038152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 34447378 - 34447416
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgt 51  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  34447378 acactaaattatatgattttatcaaattattaacggtgt 34447416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8389484 - 8389524
Alignment:
Q  5 ctataatcacactgaattatatgattttatcaaattattag 45  Q
    ||||||| |||||||||||||||||||| | ||||||||||    
T  8389484 ctataattacactgaattatatgattttcttaaattattag 8389524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 16766741 - 16766697
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  16766741 taattacactgaattatgtgattttttcaaattattagctgtgtc 16766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 31579239 - 31579283
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||||||    
T  31579239 ataattacactgaattatgtgattttctcaaattattaacggtgt 31579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 34595178 - 34595090
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcatag 95  Q
    |||| |||||||||||| ||||||| ||||||||||||  |||||   |||||  |||| |||||||| || || ||||||||||||||    
T  34595178 taattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgcttcatag 34595090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21140990 - 21141064
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||||| | ||||||| ||| ||||||||    
T  21140990 acacctataatcacactgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtg 21141064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 5236032 - 5235963
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||| ||||| |||||||| ||||| | ||||||||||||||||| | ||||| ||||||||||||||    
T  5236032 tataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtg 5235963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 15902873 - 15902780
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcata 94  Q
    |||| |||||| ||||| |||||| |||||||||||||||||||  ||||||    |||| |||||||||||||| |||| | |||||||||||    
T  15902873 acacatataattacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtctgtgtcgtgtccgtattcgtgcttcata 15902780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 26733341 - 26733281
Alignment:
Q  15 actgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||||||| ||||||| ||||||||||||||||||| | ||||| ||||| ||||||||    
T  26733341 actgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtg 26733281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 20549842 - 20549771
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||| |||||||||||  ||||||| |||||||||||||||||||  |||||| |||| ||||||    
T  20549842 acacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgtatgtgtc 20549771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17851482 - 17851420
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggt 63  Q
    |||| |||||| |||||||||||| ||||||| | |||||||||||||| || ||||||||||    
T  17851482 acacatataattacactgaattatgtgattttctaaaattattagcggtatcgatgtgtcggt 17851420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 29787383 - 29787428
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattattagcggtgtc 29787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42720898 - 42720963
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||| |||||| ||| | |||||| ||||||| ||||||||||||||||||||| ||||| |||||    
T  42720898 acacatataattacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtc 42720963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3520350 - 3520421
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||| ||| |||||||||||||||| |||||| |||| ||||||||  |||||  ||||||||||    
T  3520350 acacatataattacattgaattatatgattttctcaaatgattatcggtgtcagcgtgtcaatgtctgtgtc 3520421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5548727 - 5548676
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||||| ||||||| ||||||||| |||||||||    
T  5548727 acacatataattacactgaattatttgattttctcaaattatcagcggtgtc 5548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 32308159 - 32308120
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  32308159 acactgaattatgtgattttctcaaattattagcggtgtc 32308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 19206085 - 19206027
Alignment:
Q  17 tgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||||| ||||||| |||||||||||||||||||   |||| |||||| ||||||||    
T  19206085 tgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtg 19206027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 49107871 - 49107798
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||||||||| |||||| || |||| |||||||||||||||||||  |||||| | ||| ||||||||    
T  49107871 acacatataatcacactcaattatgtg-ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtg 49107798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 11831476 - 11831423
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcg 61  Q
    |||| ||||| |||||||||||||| ||||||||||||  ||||| ||||||||    
T  11831476 taattacactaaattatatgattttttcaaattattagttgtgtcgatgtgtcg 11831423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 11890933 - 11890970
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattatta 44  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  11890933 ataattacactgaattatatgattttttcaaattatta 11890970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 13300454 - 13300417
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattag 45  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  13300454 taattacactgaattatatgattttttcaaattattag 13300417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 14729746 - 14729697
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatg 56  Q
    ||||| |||||||||||  ||||||| |||||||||||||||| ||||||    
T  14729746 ataattacactgaattacgtgattttctcaaattattagcggtttcaatg 14729697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 2424659 - 2424619
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcg 47  Q
    ||||| |||||||||||| ||||||| ||||||||||||||    
T  2424659 ataattacactgaattatgtgattttctcaaattattagcg 2424619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 11722121 - 11722197
Alignment:
Q  16 ctgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttc 91  Q
    ||||||||| ||||||| ||||||| |||||||||||   ||||| ||||| |||||||| || || ||||||||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgcttc 11722197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 23191940 - 23191896
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||| ||| ||||||| |||||||||||||||||||    
T  23191940 taattacactgaaatatgtgattttctcaaattattagcggtgtc 23191896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24339686 - 24339642
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  24339686 taattacactgaattatgtgattttttcaaattattagctgtgtc 24339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 25481946 - 25481902
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  25481946 taattacactgaattatgtgattttttcaaattattagctgtgtc 25481902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 23870571 - 23870632
Alignment:
Q  5 ctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||    
T  23870571 ctataatcacactgaattatatgattttttcaaattattagcggtgtcgacgtgtccgtgtc 23870632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 26508154 - 26508060
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatagtgtgtaa 102  Q
    |||| |||||||||||| ||||||| ||||||||||||| ||||||  ||||| || ||||| ||||| |||| ||||| |||||||| ||||||    
T  26508154 taattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccgtatccgttcttcatagcgtgtaa 26508060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8383308 - 8383257
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||||    
T  8383308 acacttataattacactgaattatatgattttctcaaattattagcggtgtc 8383257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17005627 - 17005677
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| |||||    
T  17005627 acacttataattacactgaattatatgattttatcaaattattagtggtgt 17005677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 15544727 - 15544679
Alignment:
Q  18 gaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  15544727 gaattatgtgattttatcaaattattagcggtgtcaacgtgtcagtgtc 15544679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 29112293 - 29112353
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||||| |||||||||||||||||||| |||||| ||||| |||||||| ||||| |||||    
T  29112293 tataattacactgaattatatgattttctcaaataattagtggtgtcaacgtgtcagtgtc 29112353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7928501 - 7928450
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  7928501 acacatataattacactgaattatgtgattttttcaaattattagcggtgtc 7928450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11658866 - 11658787
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgt 80  Q
    |||| |||||||||||||||||||  |||||| ||||||||||| || |||   |||||| |||||||||||||| ||||    
T  11658866 acacatataatcacactgaattatgcgattttctcaaattattaacgatgttggtgtgtcagtgtctgtgtcgtgtccgt 11658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 26492220 - 26492307
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| |||||||||| ||||||||| |||||||||||||  ||||   ||||| ||||| |||||||| |||| | ||||||||||||    
T  26492220 taattacactgaattgtatgattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccgtattcgtgcttcatag 26492307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34307788 - 34307859
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||| |||||||| ||| ||||||| ||||||||||||||||||||  ||||  |||||||||||    
T  34307788 acacttataattacactgaaatatgtgattttctcaaattattagcggtgtcagcgtgttcgtgtctgtgtc 34307859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8039843 - 8039893
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| |||||||||||||| ||||| ||||||||||||||||||    
T  8039843 acacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29508495 - 29508451
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattag 45  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||    
T  29508495 acacatataattacactgaattatatgattttttcaaattattag 29508451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1550191 - 1550141
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    ||||||||||| |||||||||  | ||||||| ||||||||||||||||||    
T  1550191 acacctataattacactgaatagtgtgattttttcaaattattagcggtgt 1550141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 10690275 - 10690321
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||| |||||||||||| ||||||| ||| |||||||||||||||    
T  10690275 tataattacactgaattatgtgattttctcagattattagcggtgtc 10690321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11665995 - 11665921
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| ||||| |||| | |||||||||||||||||||||| ||||  |||||  |||| |||||||||    
T  11665995 acacatataattacactaaattgtgtgattttatcaaattattagcgttgtcggtgtgttagtgtgtgtgtcgtg 11665921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 21257008 - 21257058
Alignment:
Q  15 actgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgt 65  Q
    |||||||||| ||||||| ||||||||||||| ||||||  ||||||||||    
T  21257008 actgaattatgtgattttttcaaattattagctgtgtcatcgtgtcggtgt 21257058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16192758 - 16192819
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcgg 62  Q
    |||| |||||| |||||||||||| | ||||| ||||||||||| |||||||  ||||||||    
T  16192758 acacatataattacactgaattatgttattttctcaaattattaacggtgtcggtgtgtcgg 16192819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25948895 - 25948940
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagc 46  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||||    
T  25948895 acacttataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49505162 - 49505227
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||| |||||| ||||| |||||| ||||||| |||||||||||||||| ||   |||||||||||    
T  49505162 acacatataattacactaaattatgtgattttctcaaattattagcggtctctgcgtgtcggtgtc 49505227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 4987306 - 4987350
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  4987306 taattacactgaattatgtgattttttcaaattattagctgtgtc 4987350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 15796309 - 15796345
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattatta 44  Q
    |||| |||||||||||||||||||| |||||||||||    
T  15796309 taattacactgaattatatgattttttcaaattatta 15796345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 25064954 - 25064886
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    ||||| ||||| |||||| ||||||| |||||| ||||||||||||   |||||  |||||||||||||    
T  25064954 ataattacactaaattatgtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtg 25064886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 51206373 - 51206413
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  51206373 acactgaattatgtgattttttcaaattattagctgtgtca 51206413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24362210 - 24362283
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 74  Q
    |||| |||||| |||||||||||| ||||| | |||||||||||||||||||   |||||||||||||||||||    
T  24362210 acacatataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgt 24362283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34897136 - 34897071
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||| |||||| |||||||||||| ||||||| ||||||||||||||||||| | ||||| |||||    
T  34897136 acacatataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtc 34897071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12570516 - 12570590
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| ||||| |||||| || |||| | ||||||||||| ||||||| |||||||||||||| |||||    
T  12570516 acacatataattacacttaattatgtgtttttcttaaattattagcagtgtcaacgtgtcggtgtctgtatcgtg 12570590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 24669477 - 24669399
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgt 86  Q
    |||| |||||||||||| | ||||  ||||||||||| ||||||||  ||||| |||||||||||||| |||| |||||    
T  24669477 taattacactgaattatgtaatttcctcaaattattaacggtgtcagcgtgtcagtgtctgtgtcgtgtccgtgtccgt 24669399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3025602 - 3025557
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagc 46  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  3025602 acacctataattacactgaattatgtgattttctcaaattattagc 3025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 18067954 - 18067994
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  18067954 acactgaattatgtgattttctcaaattattagcggtgtca 18067994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 39954292 - 39954352
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||||| ||||| |||||| ||||||| |||||||||||||||||||   |||||||||||    
T  39954292 tataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 4673440 - 4673507
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||||||| ||||||||| ||||||||||| | |||||   ||||| ||||||||||||||    
T  4673440 taattacactgaattttatgattttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtg 4673507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 8343360 - 8343293
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| ||||| |||||| ||||||| |||||||||||||  ||||  |||||||||||| ||||||||    
T  8343360 taattacactaaattatgtgattttttcaaattattagctatgtcggtgtgtcggtgtcagtgtcgtg 8343293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11927094 - 11927137
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattatta 44  Q
    |||| |||||| |||||||||||| |||||||||||||||||||    
T  11927094 acacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12606837 - 12606888
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| ||| |||||||||||||||| ||||||||||||| |||||    
T  12606837 acacatataattacattgaattatatgattttctcaaattattagcagtgtc 12606888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 4611580 - 4611534
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||| |||||||||||| | ||||| |||||||||||||||||||    
T  4611580 tataattacactgaattatgttattttctcaaattattagcggtgtc 4611534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 36934721 - 36934647
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| ||| |||||||| ||||||| || |||||||||||||||| | ||||  ||||| ||||||||    
T  36934721 acacatataattacaatgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgtccgtgtcgtg 36934647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39820480 - 39820406
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||||| || ||||| |||||||| ||||| |||||||||||   | ||||  ||||||||||||||||||||    
T  39820480 acacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtctgtgtcgtg 39820406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3658198 - 3658133
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||||||| || |||||||| || || ||||| ||||||||||| | ||||| |||||||||||||    
T  3658198 acacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 12570747 - 12570808
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtct 67  Q
    |||||| ||||| ||||||  | |||| | ||||||||||||||||||| ||||||||||||    
T  12570747 tataattacacttaattatgcgtttttcttaaattattagcggtgtcaacgtgtcggtgtct 12570808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 25566885 - 25566840
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||| |||||||||||| ||||||| ||||||||||||| ||||||    
T  25566885 taattacactgaattatgtgattttttcaaattattagctgtgtca 25566840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 18069155 - 18069191
Alignment:
Q  17 tgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  18069155 tgaattatttgattttctcaaattattagcggtgtca 18069191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20679403 - 20679471
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgt 69  Q
    |||| |||||| |||||||| ||| ||||||| |||||||||||| |||||| |  |||| ||||||||    
T  20679403 acacttataattacactgaactatgtgattttctcaaattattaggggtgtcgacatgtcagtgtctgt 20679471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 29776082 - 29775994
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcata 94  Q
    |||||| | |||||||||  ||||||| ||||||||||||| ||||| |  ||||  |||| |||||||| |||| | |||||||||||    
T  29776082 tataattatactgaattacgtgattttctcaaattattagcagtgtcgacttgtcaatgtccgtgtcgtgaccgtattcgtgcttcata 29775994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 34201059 - 34201123
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtg 70  Q
    |||||| ||| |||||||| | ||||| |||||||||||   |||||||||||||||| ||||||    
T  34201059 tataattacattgaattatgtcattttctcaaattattattagtgtcaatgtgtcggtatctgtg 34201123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34691813 - 34691861
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggt 49  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  34691813 acacatataattacactgaattatatgattttatcaaattattagcggt 34691861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34714225 - 34714273
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggt 49  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  34714225 acacatataattacactgaattatatgattttatcaaattattagcggt 34714273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 12940950 - 12941017
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||||||||||||||||| ||||||||||||  ||||||| ||||| ||||| ||||||||    
T  12940950 taattacactgaattatatgattttttcaaattattagttgtgtcaacgtgtcagtgtccgtgtcgtg 12941017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37411252 - 37411303
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  37411252 acacatataatcacactgaattatgtgattttctcaaattattagcggtgtc 37411303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21616813 - 21616739
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||||||||||   ||||| ||||| ||||||||    
T  21616813 acacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtg 21616739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 20539689 - 20539756
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||||| | ||||| ||||| ||||||||    
T  20539689 taattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtg 20539756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23718077 - 23718006
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||| |||||||||||| ||| ||| |||||||||||||||||||  |||||| ||||| |||||    
T  23718077 acacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 23718006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24105749 - 24105678
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||| |||||||||||| ||| ||| |||||||||||||||||||  |||||| ||||| |||||    
T  24105749 acacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 24105678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 30404865 - 30404952
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| |||||||||||| ||||||| ||||||||||| | |||||   ||||| ||||| ||||| || |||| ||||||||||||||    
T  30404865 taattacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccgtatccgtgcttcatag 30404952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27286300 - 27286394
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    ||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||   || || ||||| || ||||| | || ||||||||||||||    
T  27286300 acacctataattacacttaattatgtgatcttatcaaattattagcgttgtcggcgtatcagtgtccgtatcgtgtctgtgtccgtgcttcatag 27286394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 28677955 - 28677909
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  28677955 tataattacactgaattatgtgattttttcaaattattagcggtgtc 28677909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 29970569 - 29970622
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||||||| |||  |||||| ||||||||||||||||||||||||||| |||||    
T  29970569 acactgaactatgcgattttctcaaattattagcggtgtcaatgtgtcagtgtc 29970622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31808128 - 31808063
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||| |||||| |||||||||||| ||||||| | |||||||||||||||||  |||||| |||||    
T  31808128 acacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgtc 31808063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 21782832 - 21782900
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    ||||| |||||||||||| ||||||| ||||||||||||| |||||   ||||| |||| |||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtg 21782900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 28412395 - 28412351
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||    
T  28412395 ataattacactgaattatgtgattttatcaaattattaacggtgt 28412351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44860371 - 44860319
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||| |||||| ||||||||||||  |||||| ||||||||||||||||||||    
T  44860371 acacatataattacactgaattatgcgattttctcaaattattagcggtgtca 44860319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 22084852 - 22084899
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtc 60  Q
    |||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  22084852 acactgaattatatgattttctcaaattattaacggtgttgatgtgtc 22084899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 24975345 - 24975384
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtc 52  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  24975345 acactgaattatacgattttctcaaattattagcggtgtc 24975384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 1328015 - 1327978
Alignment:
Q  15 actgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  1328015 actgaattttatgattttctcaaattattagcggtgtc 1327978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 16069268 - 16069313
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    ||||| |||||||||||||||||||| | ||||||||| |||||||    
T  16069268 ataattacactgaattatatgatttttttaaattattaacggtgtc 16069313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 18276566 - 18276521
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    ||||| |||||||||||  ||||||| |||||||||||||||||||    
T  18276566 ataattacactgaattaagtgattttctcaaattattagcggtgtc 18276521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36756352 - 36756425
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 74  Q
    |||| |||||| |||||||||||| | ||||  ||||||||||||  ||||| | ||||| |||||||||||||    
T  36756352 acacttataattacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgtcgt 36756425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 6045940 - 6045972
Alignment:
Q  17 tgaattatatgattttatcaaattattagcggt 49  Q
    |||||| ||||||||||||||||||||||||||    
T  6045940 tgaattgtatgattttatcaaattattagcggt 6045972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 8950338 - 8950374
Alignment:
Q  16 ctgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||||||| |||||| |||||||||||||||||||    
T  8950338 ctgaattataagattttttcaaattattagcggtgtc 8950374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18622657 - 18622613
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattag 45  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||    
T  18622657 acacgtataattacactgaattatgtgattttattaaattattag 18622613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 25080946 - 25080902
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtg 50  Q
    |||||| ||||||| |||| |||| ||||||||||||||||||||    
T  25080946 tataattacactgacttatgtgatcttatcaaattattagcggtg 25080902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 39323308 - 39323264
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| | ||||| |||||||||||||||||||    
T  39323308 taattacactgaattatgtaattttgtcaaattattagcggtgtc 39323264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 56488533 - 56488583
Alignment:
Q  16 ctgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  56488533 ctgaattatatgattttctcaaattgttagcggtgtcaacgtgtcggtgtc 56488583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 22440613 - 22440702
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||||| |||||||||||| ||||||| ||||||||||| ||||||| |||| || |||||  ||||||| | || |||||| |||||||    
T  22440613 tataattacactgaattatgtgattttctcaaattattaacggtgtcgatgtatcagtgtccatgtcgtgtctgtatccgtgtttcatag 22440702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 7012115 - 7012025
Alignment:
Q  3 acctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcat 93  Q
    |||||| ||||||||||||||| | ||||| ||||||||||| |||||||   ||||||||||| ||||| || | || || |||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcctgtctgtgtctgtgcttcat 7012025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 8423731 - 8423777
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  8423731 tataattacactgaattatgtgattttctcaaattattagcggtgtc 8423777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 56257978 - 56257928
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgt 57  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||| ||||    
T  56257978 ataattacactgaattatatgattttctcaaattattagcagtgtccatgt 56257928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 35952630 - 35952670
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagc 46  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  35952630 tataattacattgaattatatgattttatcaaattattagc 35952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3712517 - 3712568
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| ||| ||||||| |||||||| |||||||||||||||||||    
T  3712517 acacatataattacattgaattacatgattttctcaaattattagcggtgtc 3712568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 35161017 - 35160982
Alignment:
Q  37 aattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||||||||||||||||||||||||||||| |||||    
T  35161017 aattattagcggtgtcaatgtgtcggtgtccgtgtc 35160982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40613501 - 40613450
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  40613501 acacatataattacactgaattatgtgattttctcaaaatattagcggtgtc 40613450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 14126119 - 14126193
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| |||||||||||| ||| ||||||||||||||| | |||||   ||||  ||||||||||||||    
T  14126119 acacttataattacactgaattatgtgactttatcaaattattaacagtgtcggcgtgttagtgtctgtgtcgtg 14126193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 24343558 - 24343484
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    ||||||||||| |||||||||||| | ||||| ||||||||||| | |||||   ||||||| ||| ||||||||    
T  24343558 acacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtg 24343484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36635375 - 36635325
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||| |||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaattattagtggtgt 36635325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 40179649 - 40179715
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||||| |||||||||||| ||||||| ||||| |||||  |||||||| ||||| ||||| |||||    
T  40179649 tataattacactgaattatgtgattttttcaaactattaatggtgtcaacgtgtcagtgtccgtgtc 40179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 28964263 - 28964312
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgt 57  Q
    |||| |||||||||||| ||||||| |||||||||||||  |||||||||    
T  28964263 taattacactgaattatgtgattttttcaaattattagctatgtcaatgt 28964312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 903968 - 903924
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtg 50  Q
    |||||| |||||||||||| ||||||| ||||||||||| |||||    
T  903968 tataattacactgaattatgtgattttctcaaattattaacggtg 903924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 16189754 - 16189710
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    ||||| |||||||||||| ||||||| ||||||| ||||||||||    
T  16189754 ataattacactgaattatgtgattttctcaaatttttagcggtgt 16189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 21945547 - 21945459
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcatag 95  Q
    |||| |||||||||||| | ||||| ||||||||||||| |||||    |||| ||||||||||| || || || ||||||||||||||    
T  21945547 taattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgtgcttcatag 21945459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 30838256 - 30838216
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagc 46  Q
    |||||| ||||| |||||||| |||||||||||||||||||    
T  30838256 tataattacactaaattatataattttatcaaattattagc 30838216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 38847027 - 38847071
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| ||||||||| |||||||||| ||||||||||||| |||||    
T  38847027 taattacactgaataatatgattttttcaaattattagctgtgtc 38847071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 49431070 - 49430982
Alignment:
Q  8 taatcacactgaattatatgattttat-caaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 95  Q
    |||| |||||||||||| ||||||| | |||||||||||| |||||   |||||  |||| | |||||| |||| ||||||||||||||    
T  49431070 taattacactgaattatgtgatttttttcaaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccgtgtccgtgcttcatag 49430982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54580031 - 54580075
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattag 45  Q
    |||| |||||| |||||||||||| ||||||| ||||||||||||    
T  54580031 acacttataattacactgaattatgtgattttttcaaattattag 54580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 90889 - 90820
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||||| |||||||||||||||||||| |||||||||||  |||||   |||||| ||||||||||||||    
T  90889 tataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtctgtgtcgtg 90820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 135320 - 135393
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 74  Q
    |||| |||||| |||| ||||||| ||||||| ||||||||||||| |||||  ||||| ||||||||||||||    
T  135320 acacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgtgttggtgtctgtgtcgt 135393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5467986 - 5468034
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggt 49  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  5467986 acacctataattacactgaattatgtgattttatcaaattattatcggt 5468034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 12927700 - 12927637
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgt 69  Q
    |||||| ||||| |||||||||||||| |||||||||||||| ||||  |||||| ||||||||    
T  12927700 tataattacactaaattatatgattttctcaaattattagcgatgtcggtgtgtccgtgtctgt 12927637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28588682 - 28588733
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||| |||||||    
T  28588682 acacctataattacactgaattatgtgattttctcaaattattaccggtgtc 28588733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 10022678 - 10022625
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgt 59  Q
    |||||| |||||||||||||||||||||||||||||| | || |||| ||||||    
T  10022678 tataattacactgaattatatgattttatcaaattatcaacgatgtcgatgtgt 10022625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6471897 - 6471949
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||| |||||| |||||||||||| ||||||| ||||||||||||| ||||||    
T  6471897 acacatataattacactgaattatgtgattttctcaaattattagccgtgtca 6471949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 14574059 - 14574131
Alignment:
Q  3 acctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    ||||||||| |||||||||||||| |||| ||||||||||||   |||||   |||||||||| |||||||||    
T  14574059 acctataattacactgaattatatcatttcatcaaattattactcgtgtcggcgtgtcggtgtttgtgtcgtg 14574131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39205931 - 39205863
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgt 69  Q
    |||| |||||| ||||  |||||||||||||| ||||||||||||| ||||| | ||||| ||||||||    
T  39205931 acacatataattacacctaattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtctgt 39205863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3966554 - 3966503
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||| |||||||||| | ||||||| |||||||||||||||||||    
T  3966554 acacatataattacactgaattgtgtgattttctcaaattattagcggtgtc 3966503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 23221022 - 23220983
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtc 52  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  23221022 acactaaattatgtgattttatcaaattattagcggtgtc 23220983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 27144514 - 27144443
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||| |||||| ||||| |||||| ||||||  |||||||||||||||||||   ||||| |||||||||||    
T  27144514 acacatataattacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtctgtgtc 27144443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 42488068 - 42488135
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| ||| |||||||||| ||||||| ||||||| | ||||||| | ||||| ||||||||||||||    
T  42488068 taattacattgaattatataattttattaaattatcaacggtgtcgacgtgtcagtgtctgtgtcgtg 42488135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 17593735 - 17593785
Alignment:
Q  6 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatg 56  Q
    |||||| |||||||||||  ||||||| |||||||||||||||| ||||||    
T  17593735 tataattacactgaattacgtgattttctcaaattattagcggtttcaatg 17593785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25863255 - 25863181
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 75  Q
    |||| |||||| |||||||||||||| ||||| |||||||||||    |||| | |||||| |||||||||||||    
T  25863255 acacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgatgtctgtgtcgtg 25863181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30502396 - 30502446
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| |||||||||||  ||||||| ||||||||||||||||||    
T  30502396 acacatataattacactgaattaagtgattttctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30542739 - 30542789
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 51  Q
    |||| |||||| |||||||||||  ||||||| ||||||||||||||||||    
T  30542739 acacatataattacactgaattaagtgattttctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 39698585 - 39698527
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||| |||||||||||| ||||||| ||||||||||||| ||||||  ||||| |||||    
T  39698585 taattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtc 39698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2436973 - 2436878
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc--gtggccgtctccgtgcttcatag 95  Q
    |||| ||||||||||  ||||||| |||||||  ||||||||||||||||||   ||||| ||||| |||||  ||| |||| ||||||||||||||    
T  2436973 acacatataatcacaacgaattatgtgatttttgcaaattattagcggtgtcggcgtgtcagtgtc-gtgtccggtgtccgtatccgtgcttcatag 2436878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 7175045 - 7175098
Alignment:
Q  19 aattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 72  Q
    |||||| ||||||| ||||||||||| ||||||| ||||||| ||||| |||||    
T  7175045 aattatgtgattttctcaaattattaacggtgtcgatgtgtcagtgtccgtgtc 7175098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 19438382 - 19438329
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 66  Q
    |||||||||||| ||||||| ||||||||| |||| |||| ||||||| |||||    
T  19438382 acactgaattatgtgattttctcaaattatcagcgatgtcgatgtgtcagtgtc 19438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23015997 - 23016073
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc--aatgtgtcggtgtctgtgtcgtg 75  Q
    ||||||||||| |||||||||||| ||||||| |||||| |||| || ||||  |  ||||||||||| ||||||||    
T  23015997 acacctataattacactgaattatgtgattttctcaaatgattaacgatgtcagagagtgtcggtgtccgtgtcgtg 23016073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25817546 - 25817493
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaa 54  Q
    |||| |||||||| ||||||| |||||||||| | ||||||||||| |||||||    
T  25817546 acacatataatcatactgaatcatatgatttttttaaattattagcagtgtcaa 25817493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 34879389 - 34879352
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtg 50  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  34879389 acactgaattatatgattttctcaaatttttagcggtg 34879352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 21191071 - 21191115
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  21191071 taattacactgaattatgtgattttttcaaattattagctgtgtc 21191115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 27932279 - 27932235
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| | ||||| |||||||||||||||||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggtgtc 27932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32630743 - 32630795
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||| |||||| ||| |||||||||| ||||| ||||||||||| ||||||||    
T  32630743 acacatataattacattgaattatataattttctcaaattattatcggtgtca 32630795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 1074 - 1013
Alignment:
Q  13 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 74  Q
    |||||||||||| | ||||| |||||||||||||||||||  |||||| | |||||||||||    
T  1074 acactgaattatgtaattttttcaaattattagcggtgtcggtgtgtcagcgtctgtgtcgt 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44533 - 44585
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtca 53  Q
    |||| |||||| |||||||||||| ||||||| ||||||| ||||||||||||    
T  44533 acacatataattacactgaattatgtgattttctcaaatttttagcggtgtca 44585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 68250 - 68309
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtc 60  Q
    ||||||||||| | ||| |||||||||||||| ||||||||||| |||||  ||||||||    
T  68250 acacctataattatactaaattatatgattttctcaaattattaacggtgctaatgtgtc 68309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 241639 - 241550
Alignment:
Q  7 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcatag 95  Q
    ||||| ||||| |||||| |||||||  |||||||||||| |||||   ||||| ||||| |||||||| || || ||||||||||||||    
T  241639 ataattacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgcttcatag 241550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 20216 - 20172
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  20216 taattacactgaattatgtgattttttcaaattattagctgtgtc 20172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 51855 - 51811
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  51855 taattacactgaattatgtgattttttcaaattattagctgtgtc 51811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 53231 - 53183
Alignment:
Q  1 acacctataatcacactgaattatatgattttatcaaattattagcggt 49  Q
    |||| |||||| |||||||||||| ||||||| |||||||||| |||||    
T  53231 acacttataattacactgaattatgtgattttctcaaattattggcggt 53183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 92851 - 92807
Alignment:
Q  8 taatcacactgaattatatgattttatcaaattattagcggtgtc 52  Q
    |||| |||||||||||| | ||||| |||||||||||||||||||    
T  92851 taattacactgaattatgtaattttctcaaattattagcggtgtc 92807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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