View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14498_low_3 (Length: 278)
Name: NF14498_low_3
Description: NF14498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14498_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 37096076 - 37096321
Alignment:
| Q |
13 |
aacctgtgtaagtagaaaaatgtaacattttcagtttcaannnnnnnnaaaaattgtgttcattttatattgctaaaccctaaactctaaacaattgtga |
112 |
Q |
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| T |
37096076 |
aacctgtgtaagtagagaaatgtaacattttcagtttt--ttttttttaaattttgtgttcattttatattgctaaaccataaaccctaaacaattgtga |
37096173 |
T |
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| Q |
113 |
gagagaaaatggaatctataataaacaagtatcatgaaaaataaacaggactagaagaagctcataatatacgtgtagttgatgtgcatttaccaaccaa |
212 |
Q |
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| T |
37096174 |
gagagaaaatggaatctataataaacaagtatcatgaaaaataaacaggactagaagaagctcataatatacgtgtagttgatgtgcatttaccaacc-- |
37096271 |
T |
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| Q |
213 |
ttaatatatatttaccttgaagaagcaacaccaagatgcaaagagcagtaac |
264 |
Q |
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| T |
37096272 |
--aatatatatttaccttgaagaagcaacaccaagatgcaaagagcagtaac |
37096321 |
T |
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