View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14498_low_5 (Length: 237)

Name: NF14498_low_5
Description: NF14498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14498_low_5
NF14498_low_5
[»] scaffold0428 (2 HSPs)
scaffold0428 (8-221)||(12190-12403)
scaffold0428 (5-79)||(5417-5494)
[»] chr6 (9 HSPs)
chr6 (8-221)||(33281849-33282062)
chr6 (21-182)||(33397680-33397841)
chr6 (21-182)||(33408591-33408752)
chr6 (5-79)||(33283654-33283731)
chr6 (9-79)||(33387126-33387199)
chr6 (180-221)||(33397596-33397637)
chr6 (180-221)||(33408507-33408548)
chr6 (9-79)||(33261594-33261665)
chr6 (19-65)||(33405220-33405266)
[»] chr2 (1 HSPs)
chr2 (16-79)||(17441816-17441882)


Alignment Details
Target: scaffold0428 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 12190 - 12403
Alignment:
Q  8 ggtgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcatgtcatccacagnnnnnnntctcaaacctctacatctgaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  12190 ggtgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcatgtcatccacaagaaaaaatctcaaacctctacatctgaa 12289  T
Q  108 gtggctgatgaaagtgtaacagaaaatggagttgatcaaattgttgccgaagctaaacaacaatcacatatcgatgcagttgagccttgctctgttatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12290 gtggctgatgaaagtgtaacagaaaatggagttgatcaaattgttgccgaagctaaacaacaatcacatatcgatgcagttgagccttgctctgttatca 12389  T
Q  208 cagaatcagaaggt 221  Q
    ||||||||||||||    
T  12390 cagaatcagaaggt 12403  T

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Target: scaffold0428; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 5494 - 5417
Alignment:
Q  5 tccggtgtctgtgtttcatagacaaca---ttttaaggaacactttatcacggaaatctgcattcatgtcatccacag 79  Q
    |||||||||||||||||||||||||||   |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5494 tccggtgtctgtgtttcatagacaacaacattttaaggaacactatatcactgaaatctgcattcatgtcatccacag 5417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 33282062 - 33281849
Alignment:
Q  8 ggtgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcatgtcatccacagnnnnnnntctcaaacctctacatctgaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  33282062 ggtgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcatgtcatccacaagaaaaaatctcaaacctctacatctgaa 33281963  T
Q  108 gtggctgatgaaagtgtaacagaaaatggagttgatcaaattgttgccgaagctaaacaacaatcacatatcgatgcagttgagccttgctctgttatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33281962 gtggctgatgaaagtgtaacagaaaatggagttgatcaaattgttgccgaagctaaacaacaatcacatatcgatgcagttgagccttgctctgttatca 33281863  T
Q  208 cagaatcagaaggt 221  Q
    ||||||||||||||    
T  33281862 cagaatcagaaggt 33281849  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 33397841 - 33397680
Alignment:
Q  21 catagacaacattttaaggaacactttatcacggaaatctgcattcatgtcatccacagnnnnnnntctcaaacctctacatctgaagtggctgatgaaa 120  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||  |||||||||||||||||    
T  33397841 catagacaacattttaaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcaaacctctacagttgaagtggctgatgaaa 33397742  T
Q  121 gtgtaacagaaaatggagttgatcaaattgttgccgaagctaaacaacaatcacatatcgat 182  Q
    ||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||    
T  33397741 gtgtaacagaaaatgtagttgatcaaattgttgccgaatatgaacaacaatcacatatcgat 33397680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 33408752 - 33408591
Alignment:
Q  21 catagacaacattttaaggaacactttatcacggaaatctgcattcatgtcatccacagnnnnnnntctcaaacctctacatctgaagtggctgatgaaa 120  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||  |||||||||||||||||    
T  33408752 catagacaacattttaaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcaaacctctacagttgaagtggctgatgaaa 33408653  T
Q  121 gtgtaacagaaaatggagttgatcaaattgttgccgaagctaaacaacaatcacatatcgat 182  Q
    ||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||    
T  33408652 gtgtaacagaaaatgtagttgatcaaattgttgccgaatatgaacaacaatcacatatcgat 33408591  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 33283731 - 33283654
Alignment:
Q  5 tccggtgtctgtgtttcatagacaaca---ttttaaggaacactttatcacggaaatctgcattcatgtcatccacag 79  Q
    |||||||||||||||||||||||||||   |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  33283731 tccggtgtctgtgtttcatagacaacaacattttaaggaacactatatcactgaaatctgcattcatgtcatccacag 33283654  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 33387199 - 33387126
Alignment:
Q  9 gtgtctgtgtttcatagacaacat---tttaaggaacactttatcacggaaatctgcattcatgtcatccacag 79  Q
    |||||||||||||||||||||||    ||| |||||||||||||||| || |||||||||||||||||||||||    
T  33387199 gtgtctgtgtttcatagacaacaacaattttaggaacactttatcactgagatctgcattcatgtcatccacag 33387126  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 33397637 - 33397596
Alignment:
Q  180 gatgcagttgagccttgctctgttatcacagaatcagaaggt 221  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  33397637 gatgcagttgagccttgccatgttatcacagaatcagaaggt 33397596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 33408548 - 33408507
Alignment:
Q  180 gatgcagttgagccttgctctgttatcacagaatcagaaggt 221  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  33408548 gatgcagttgagccttgccatgttatcacagaatcagaaggt 33408507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 33261665 - 33261594
Alignment:
Q  9 gtgtctgtgtttcatagacaaca---ttttaaggaacactttatcacggaaatctgcattcatgtcatccacag 79  Q
    |||||||||||||||||||||||   ||||||| |||  | |||||  ||||||||||||||||||||||||||    
T  33261665 gtgtctgtgtttcatagacaacaacattttaagtaac--tatatcattgaaatctgcattcatgtcatccacag 33261594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 33405266 - 33405220
Alignment:
Q  19 ttcatagacaacattttaaggaacactttatcacggaaatctgcatt 65  Q
    |||||||| ||||||||||||||||||||||||  |||||| |||||    
T  33405266 ttcatagataacattttaaggaacactttatcattgaaatcagcatt 33405220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 17441816 - 17441882
Alignment:
Q  16 tgtttcatagacaaca---ttttaaggaacactttatcacggaaatctgcattcatgtcatccacag 79  Q
    ||||||||||||||||   ||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  17441816 tgtttcatagacaacaatattttaaggaacactttatcactgaaatttgcatccatgtcatccacag 17441882  T

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