View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14498_low_6 (Length: 225)
Name: NF14498_low_6
Description: NF14498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14498_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 43309675 - 43309870
Alignment:
| Q |
13 |
taattctcaaaagtaacgtcaccgtgcatgtgacacaaccaagactgaacaagatgaaatttgtccttttttattaggatgatctccgttatatctctct |
112 |
Q |
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| T |
43309675 |
taattctcaaaaataacgtcaccgtgcatgtgacacaaccaagactgaacaagatgaaatttgtccttttttattaggatgatctccgttatatctctct |
43309774 |
T |
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| Q |
113 |
attacctatttaatttttcaaaaaagtaaaattttcaaatttagtaaatgtgacctcacacttatttttcatctttaaagaattgtaggtccaact |
208 |
Q |
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| T |
43309775 |
attacctatttaatttttcaaaaaagtaaaattttcaaatttagtaaatgtgacctcacacttatttttcatctttaaagaattgtaggtccaact |
43309870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 43181446 - 43181269
Alignment:
| Q |
16 |
ttctcaaaagtaacgtcaccgtgcatgtgacacaaccaagactgaacaagatgaaatttgtccttttttattaggatgatctccgttatatctctctatt |
115 |
Q |
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| T |
43181446 |
ttctcaaaagtaacgccacaatgcatgtgacacaatcaagattgagtaggatgaaatttgtcgttttcaatcaggatgatctcagtcata--tctctatt |
43181349 |
T |
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| Q |
116 |
acct-atttaatttttcaaaaaagtaaaattttcaaatttagtaaatgt-gacctcacacttatttttcatctttaaagaat |
195 |
Q |
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| T |
43181348 |
aactgatgtatttatt--aaaaagtaaagtttttaaatttagtaaaaatggattatacacttatttttcatctttaaagaat |
43181269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 23913109 - 23913288
Alignment:
| Q |
16 |
ttctcaaaagtaacgtcaccgtgcatgtgacacaaccaagactgaacaagatgaaatttgtccttttttattaggatgatctccgttatatctctctatt |
115 |
Q |
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|||||||||||||| | | ||||||||| |||| |||||||| || |||||||||||| ||||| || |||||||||| || |||||||| || |
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| T |
23913109 |
ttctcaaaagtaacaccgcaatgcatgtgatacaattaagactgagtaaaatgaaatttgtcgtttttcatcaggatgatcttagtcatatctct---tt |
23913205 |
T |
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| Q |
116 |
acctatttaatttttcaaaaaagtaaaattttcaaatttagtaaatgtgacctc-acacttatttttcatctttaaagaattgt |
198 |
Q |
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|||||| | |||| | |||||||||| ||||||||| ||||||| || || ||||||||||||||||||||||||||||| |
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| T |
23913206 |
acctatgttattta-ctaaaaagtaaacttttcaaatctagtaaaaatggactatacacttatttttcatctttaaagaattgt |
23913288 |
T |
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