View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14499_high_3 (Length: 265)
Name: NF14499_high_3
Description: NF14499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14499_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 24563889 - 24563642
Alignment:
| Q |
18 |
aatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccattgttgg |
117 |
Q |
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| T |
24563889 |
aatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccattgttgg |
24563790 |
T |
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| Q |
118 |
tttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaag |
217 |
Q |
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| T |
24563789 |
tttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaag |
24563690 |
T |
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| Q |
218 |
ataatgagttgatcgtggtatggctgctaagggcttttccaatacatt |
265 |
Q |
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| T |
24563689 |
ataatgagttgatcgtggtatggctactaagggcttttccaatacatt |
24563642 |
T |
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Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 45535861 - 45536060
Alignment:
| Q |
18 |
aatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaa----agcagttgcgaacttatctaaaccatt- |
112 |
Q |
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| T |
45535861 |
aatgagagaatgattggaattaatgatttcaacgggtatacaaggatttacatgagtctagaaattaattaaaacacttgggaacttatctaaaccattt |
45535960 |
T |
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| Q |
113 |
gttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaac |
212 |
Q |
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| T |
45535961 |
gttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaaaagggaggaaatccaagaagatatgctcaac |
45536060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 44337779 - 44337629
Alignment:
| Q |
70 |
tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttgg-tttcttaattacggatgtagtttgagatttttaatgatacactatt |
168 |
Q |
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| T |
44337779 |
tgagtctagaagttaaaacacttgggaacttatctaaaccattgttagtttggttttctgaattacaaatatatttcaaaaaatttaatgatacactatt |
44337680 |
T |
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| Q |
169 |
aatagaacataaaaagggagggaatccaagaagatatgctcaactaaagata |
220 |
Q |
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| T |
44337679 |
attagaaca-gaaaagtgagggaatccaagaaactatgttcaactgaagata |
44337629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 44337525 - 44337486
Alignment:
| Q |
226 |
ttgatcgtggtatggctgctaagggcttttccaatacatt |
265 |
Q |
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| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatt |
44337486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 9798758 - 9798586
Alignment:
| Q |
59 |
agggatttacg--tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttggtttcttaattacggatgtagtttgagatttttaa |
156 |
Q |
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| T |
9798758 |
agggatttacgaatgaatctagaaactaaaacacttgggaacttatctaaaccattgttgatttggtttcttaattacggatgtagttcgagatttttaa |
9798659 |
T |
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| Q |
157 |
tgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagataatgagttga |
229 |
Q |
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| T |
9798658 |
tgatacactattattagagcagacaaatggagggaatccaagaagatatgctcaactaaagataaggagttga |
9798586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 19190201 - 19190303
Alignment:
| Q |
110 |
attgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
209 |
Q |
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| T |
19190201 |
attgttggtttagtttctgaattatgaatgtatttcgaaaattttaatgatgtactattattagaacagaaaaagtgagggaatccaagaagctatgctc |
19190300 |
T |
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| Q |
210 |
aac |
212 |
Q |
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| T |
19190301 |
aac |
19190303 |
T |
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