View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14499_low_1 (Length: 467)
Name: NF14499_low_1
Description: NF14499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14499_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 3233222 - 3233122
Alignment:
| Q |
20 |
tggctgatgtttattttgataagctgtaaatgggttcgtcaagttcgatcctatatatcctttttctttttgtttaattgctattaaggttacaacaatg |
119 |
Q |
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| T |
3233222 |
tggctgatgtttattttgataagccgtaaatgggttcgtcaagttcgatcctatgtatccatt---tttttgtttaattgctattaaggttacaacaacg |
3233126 |
T |
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| Q |
120 |
atcc |
123 |
Q |
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|||| |
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| T |
3233125 |
atcc |
3233122 |
T |
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Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 10776615 - 10776668
Alignment:
| Q |
385 |
ttaatggaggaatcatgctcaagtaagaaagatgaacataattacgatcaatta |
438 |
Q |
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| T |
10776615 |
ttaatggaggaatcatgctcaagtaagaaagatgaacataattacgatcaatta |
10776668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 10776043 - 10776148
Alignment:
| Q |
177 |
tatttttaacactcttattaatttcttatacaaatcgaaccctgnnnnnnnnnnt---gaaaatacaacatacaaaatccaacccccaattcatgaaatt |
273 |
Q |
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| T |
10776043 |
tatttttaacacttttattaatttcttatacaaatcgaaacctgcaaaaaaaaataatgaaaatacaatatacaaaatccaacccccaattcatgaaatt |
10776142 |
T |
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| Q |
274 |
ggattg |
279 |
Q |
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|||||| |
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| T |
10776143 |
ggattg |
10776148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 10776500 - 10776548
Alignment:
| Q |
270 |
aattggattgaattcaacagaggacaaaacaaaacatggaggattcatg |
318 |
Q |
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| T |
10776500 |
aattggatttaattcaacggaggacaaaacaaaacatggaggattcatg |
10776548 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 10523460 - 10523399
Alignment:
| Q |
141 |
ataaaaattgaaacttggtttgatttcaagattgat--tatttttaacactcttattaattt |
200 |
Q |
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| T |
10523460 |
ataaaaattgaaactaggtttgatttcaatattgattatatttataacacttttattaattt |
10523399 |
T |
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