View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14499_low_2 (Length: 405)
Name: NF14499_low_2
Description: NF14499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14499_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 62 - 405
Target Start/End: Original strand, 48876664 - 48877006
Alignment:
| Q |
62 |
acccctttttctatagggctagtcactagagatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
161 |
Q |
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| T |
48876664 |
acccctttttctatagggctagtcactagtgatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
48876763 |
T |
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| Q |
162 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcgttgcaaaattattaagaaatgccagtagatatgattttaccaaa |
261 |
Q |
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| T |
48876764 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcattgcaaaattattaagaaatgccagtagatatga-tttaccaaa |
48876862 |
T |
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| Q |
262 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggacnnnnnnnnntctattcg |
361 |
Q |
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| T |
48876863 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggacaaaaaaaaatctattcg |
48876962 |
T |
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| Q |
362 |
tatagccatgaacttactggccatctcgctgaagttcagagcaa |
405 |
Q |
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| T |
48876963 |
tatagccatgaacttactggcgatctcgctgaagttcagagcaa |
48877006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 48876557 - 48876609
Alignment:
| Q |
11 |
agcataggtactatgatgttgttgaaatgtgcagtcattttgatttctgttac |
63 |
Q |
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| T |
48876557 |
agcataggtactatgatgttgttgaaatgtgcagtcattttgatttctgttac |
48876609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 8381420 - 8381353
Alignment:
| Q |
265 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgtta |
332 |
Q |
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| T |
8381420 |
ggccaaagcttgttcctcagctagcattgatcggctcaagaacttgaatagaagaactgttgatgtta |
8381353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 53456860 - 53456785
Alignment:
| Q |
265 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatct |
340 |
Q |
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| T |
53456860 |
ggccaaagcttgttcttcagctagtgttgcttggctgaagaatgtgaacagaagaactgttgatgttattgcatct |
53456785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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