View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_12 (Length: 342)
Name: NF1449_high_12
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 7378502 - 7378164
Alignment:
| Q |
1 |
tcagttttaaacatgagaataattgatcctaagtttgcaattcagtttttgaccgtggagttccgatgaaatctagtgcattagttttgatgagactttg |
100 |
Q |
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| T |
7378502 |
tcagttttaaacatgagaataattgatcctaagttagcaattcagtttttgaccatggagttctgatggaatttagtgcattagttttgatgagactttg |
7378403 |
T |
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| Q |
101 |
annnnnnnn--caatatgaatcaaggaaatctctaaatcatatttcaattggttcaatccgcttaaccacatttgaactagtgactaataaataattagt |
198 |
Q |
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| T |
7378402 |
attttttttttcaatatgaatcaaggaaatctctaaattatatttcaattggttcaatccgcttaaccacatttgaactagggactaataaataattagt |
7378303 |
T |
|
| Q |
199 |
ttagccaattgtaatttcaacttagttcaatactataaattaaactacgatatagagttc-------aaacctagttacacgaactagccgaaacagcta |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
7378302 |
ttagccaattgtgatttcaacttagttcaatactataaattaaactacgatatagagttcaaacgtcaaacctagttacacgaactagtcgaaacagcta |
7378203 |
T |
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| Q |
292 |
ttagacatcgcttagtagtttatatcacaccaaccacat |
330 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
7378202 |
ttagacatcgtttagtagtttatatcacaccaaccacat |
7378164 |
T |
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