View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_17 (Length: 299)
Name: NF1449_high_17
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_17 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 31200975 - 31200694
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatccgcaagtgattacactgccattttctaaatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31200975 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatctgcaagtgattacactgccattttctaaatt |
31200876 |
T |
|
| Q |
118 |
gctacagctaaaaaattggtgaaattattcatttttaccgtacagagagttgcaatacctaattccaatttcaatgttgttgtaggcttcttacctcgaa |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200875 |
gctacaactaaaaaattggtgaaattattcatttttaccgtactgagagttgcaatacctaattccaatttcaatgttgttgtaggcttcttacctcgaa |
31200776 |
T |
|
| Q |
218 |
cttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200775 |
cttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtt |
31200694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 31181934 - 31181653
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatccgcaagtgattacactgccattttctaaatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31181934 |
ttgtcaaatagcggctatagcaatgttatagtatagccgaatttgaacaaactgctatgttatgtgatccgcaagtgattacactgccattttctaaatt |
31181835 |
T |
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| Q |
118 |
gctacagctaaaaaattggtgaaattattcatttttaccgtacagagagttgcaatacctaattccaatttcaatgttgttgtaggcttcttacctcgaa |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31181834 |
gctacaactaaaaaattggtgaaattattcatttttaccgtactgagagttgcaatacctaattccaatttcaatgttgttgtaggcttcttacctcgaa |
31181735 |
T |
|
| Q |
218 |
cttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31181734 |
cttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtt |
31181653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 49 - 299
Target Start/End: Complemental strand, 31219563 - 31219313
Alignment:
| Q |
49 |
tatagcggaatttgaacaaattgctattttatgtgatccgcaagtgattacactgccattttctaaattgctacagctaaaaaattggtgaaattattca |
148 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| ||| | | ||||||||||||||||| ||||||||| ||||||||| || || |||| || |
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| T |
31219563 |
tataacggaatttgaacaaactgctattttatgtgatccacaattaactacactgccattttctagattgctacacctaaaaaataggcgattttatcca |
31219464 |
T |
|
| Q |
149 |
tttttaccgtacagagagttgcaatacctaattccaatttcaatgttgttgtaggcttcttacctcgaacttttttactggtaatttacctgcaacgttt |
248 |
Q |
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||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
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| T |
31219463 |
tttttactatacagagaattgcaatccctaattccaatttcaatgttgttgtaggcttcttacctcgaacttttttaccggtaatttacctccaacattt |
31219364 |
T |
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| Q |
249 |
gctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtt |
299 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219363 |
gctaacctcactaaactgaagcacatgtaacaaatccttcccttaattgtt |
31219313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 31234893 - 31234801
Alignment:
| Q |
186 |
tttcaatgttgttgtaggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaa |
278 |
Q |
| |
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||||||| |||||| |||||||||||||| ||| ||||||||| |||||||| ||||| ||| ||||||| ||||| || |||||||||||| |
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| T |
31234893 |
tttcaatattgttgaaggcttcttacctccaacaattttactggaaatttaccagcaacattttctaagcttactaatctaaagcacatgtaa |
31234801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 31246753 - 31246676
Alignment:
| Q |
201 |
aggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaa |
278 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| ||||| |||||||||||| |||| |||||||| |||||| |
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| T |
31246753 |
aggcttcttacctccaacaattttactggaaatttaccagcaacatttgctaagctcgctaatctgaagcagatgtaa |
31246676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 29378470 - 29378528
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctatt |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||| |
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| T |
29378470 |
ttgtcaaatagcggctatagcagtgttacaacgtagcggaatttgaacaaattgatatt |
29378528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31219671 - 31219618
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattg |
71 |
Q |
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|||||||||||| | ||||| | ||||||||||||||||||||| ||||||||| |
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| T |
31219671 |
ttgtcaaatagcagttatagaagtgttatagtatagcggaattttaacaaattg |
31219618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 41304989 - 41304930
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattt |
77 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||| | |||||||||||||||| ||||| |
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|
| T |
41304989 |
ttgtcaaatggcggctatagcagtattatagtatatcagaatttgaacaaattgttattt |
41304930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 38622890 - 38622832
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctatttta |
79 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||||||||||| || ||||||| |
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|
| T |
38622890 |
ttgtcaaatagcggctatagcattgtt---gtatagcgaaatttgaacaaactgttatttta |
38622832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34925331 - 34925274
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctatttt |
78 |
Q |
| |
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|||||||||||||||||||||| || ||| ||||| ||||||||||||| ||||||||| |
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| T |
34925331 |
ttgtcaaatagcggctatagca---ttgtagcatagcagaatttgaacaaactgctatttt |
34925274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 10372601 - 10372673
Alignment:
| Q |
21 |
tcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatccgcaagtgat |
96 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||| || |||||| || ||||||||| |||| |
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| T |
10372601 |
tcaaatagcggctatagcaa---tatagcatagccaaatttgaacaaactgttattttctgggatccgcaattgat |
10372673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 32616868 - 32616812
Alignment:
| Q |
18 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgcta |
74 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| ||||| | ||||||||||||||||| |
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|
| T |
32616868 |
ttgttaaatagcggctatagcagcgctatagcatagcaggatttgaacaaattgcta |
32616812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 24769268 - 24769321
Alignment:
| Q |
16 |
cattgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaat |
69 |
Q |
| |
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|||||||| |||| || | |||| ||| |||||||||||||||||||||||||| |
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| T |
24769268 |
cattgtcatatagtggttgtagctatgatatagtatagcggaatttgaacaaat |
24769321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 50794531 - 50794586
Alignment:
| Q |
17 |
attgtcaaatagcggctatagcaa---tgttatagtatagcggaatttgaacaaat |
69 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |
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| T |
50794531 |
attgtcaaatagcggctatagcaaccctgttataacatagtggaatttgaacaaat |
50794586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 11257699 - 11257747
Alignment:
| Q |
28 |
gcggctatagcaatgttatagtatagcggaatttgaacaaattgctatt |
76 |
Q |
| |
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|||||||||||| || |||||| ||||||||| ||||||||| |||||| |
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|
| T |
11257699 |
gcggctatagcagtgctatagtgtagcggaatatgaacaaatcgctatt |
11257747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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