View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_19 (Length: 278)
Name: NF1449_high_19
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 43410988 - 43410733
Alignment:
| Q |
16 |
gtgatcataaaactaattctctct--ttcacttatgcattttttcttaacatgtacaaaatgaacaaaaagctccgtaattatgtgacatagagagagag |
113 |
Q |
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| T |
43410988 |
gtgatcataaaactaattttctctcgttcacttatgcattttttcttaaaatgtacaaaatgaacaaaaagctcggtaattatgtgacatagagagagag |
43410889 |
T |
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| Q |
114 |
taataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtcccactggccaatgttatataatattggcatcccaatagtgcacaaatggtg |
213 |
Q |
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| T |
43410888 |
taataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtctcaatggccaatgttatataatattgacatcccaataatgcacaaacggtg |
43410789 |
T |
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| Q |
214 |
tctgtgtttgcacctctgtgtgggtttgcaatacttgtccctatctttgcctttgc |
269 |
Q |
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| T |
43410788 |
ttcgtgtttgtacctcggtgtgggtttgcaatacttgtccctatttttgcctttgc |
43410733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 34955117 - 34955069
Alignment:
| Q |
167 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
215 |
Q |
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| T |
34955117 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
34955069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 37811135 - 37811087
Alignment:
| Q |
167 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
215 |
Q |
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| T |
37811135 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
37811087 |
T |
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