View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_2 (Length: 600)
Name: NF1449_high_2
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 11889926 - 11890517
Alignment:
| Q |
1 |
ctacaagtccccaccaccacctaaggttcttcctccaccatactattacaactctcctcctccacctgttgtgtatcatcaccctcatccctaccaccac |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889926 |
ctacaagtccccaccaccacctaaggttcttccaccaccatactattacaactctcctcctccacctgttgtgtatcatcaccctcatccctaccaccat |
11890025 |
T |
|
| Q |
101 |
gcattgatcgtgaaggtagtgggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890026 |
gcattgatcgtgaaggtagtgggtaacgtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacat |
11890125 |
T |
|
| Q |
201 |
cacattacatttctcaatcctttcatttttatatattttatgtaaatcactattggctcgtagtttctcaataccattacaactaaactgcaagtttcag |
300 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890126 |
cacattacatttctcaattctttcatttttatagattttatgtacatcactattggctcgtagtttctcaataccattacaactaaactgcaagtttcag |
11890225 |
T |
|
| Q |
301 |
taatgagattcatatagacatgtttttattaacatctttgtttctta-aaattatacaaacacttaatttaggtctctccttgtccaataaagaaaacaa |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
11890226 |
taatgagattcatatagacatgtttttattaacatctttgtttcttagaaattatacaaacacttaatttaggtttctccatgtccaataaagtaaacaa |
11890325 |
T |
|
| Q |
400 |
ttgatatatcaaataaac-------atatatcatttacctcattaaaatttaataatcctgcctaatataaagattcggtttgacaatgatagtttagtg |
492 |
Q |
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| T |
11890326 |
ttgatatatcaaattaacatatatgatatatcatttacctcattaaaatttaataatcctgcctaatataaagattcggtttgaaaatgatagtttagtg |
11890425 |
T |
|
| Q |
493 |
agcttctttataataacactctccaatataatatgttttaaaaacaattatatttcaatttgtctaaattcaaatttgttatgggacaggtg |
584 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11890426 |
agcttctttataataacactctccaatatattatgttttaaaaacaattatatttctatttgtctaaattcaaatttgttatgggacaggtg |
11890517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 11880470 - 11880675
Alignment:
| Q |
1 |
ctacaagtccccaccaccacctaaggttcttcctccaccatactattacaactctcctcctccacctgttgtgtatcatcaccctcatccctaccaccac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
11880470 |
ctacaagtccccaccaccaccaaaggtccttccaccaccatactattacaattctcctcctccacctgttgtgtatcctcacccatatccctaccaccac |
11880569 |
T |
|
| Q |
101 |
gcattgatcgtgaaggtagtgggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacat |
200 |
Q |
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|| | || |||| |||||| ||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
11880570 |
tcacttattgtgagggtagtcggtaaagtctacagcttcagatgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacat |
11880669 |
T |
|
| Q |
201 |
cacatt |
206 |
Q |
| |
|
||||| |
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|
| T |
11880670 |
tacatt |
11880675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 11902970 - 11903175
Alignment:
| Q |
1 |
ctacaagtccccaccaccacctaaggttcttcctccaccatactattacaactctcctcctccacctgttgtgtatcatcaccctcatccctaccaccac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
11902970 |
ctacaagtccccaccaccaccaaaggtccttccaccaccatactattacaattctcctcctccacctgttgtgtatcctcacccatatccctaccaccac |
11903069 |
T |
|
| Q |
101 |
gcattgatcgtgaaggtagtgggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacat |
200 |
Q |
| |
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|| | || |||| |||||| ||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
11903070 |
tcacttattgtgagggtagtcggtaaagtctacagcttcagatgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacat |
11903169 |
T |
|
| Q |
201 |
cacatt |
206 |
Q |
| |
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||||| |
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|
| T |
11903170 |
tacatt |
11903175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 52820772 - 52820658
Alignment:
| Q |
92 |
taccaccacgcattgatcgtgaaggtagtgggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctca |
191 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||||||||| || || ||| | |||||||||||||||||||||||| |||||||||| |||| |
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| T |
52820772 |
taccaccacccattgattgtgaaggtagtgggtaaagtctacagctacaagtgctataattgggagtatcctgaaaagtctcatgacaagaaacatctca |
52820673 |
T |
|
| Q |
192 |
aaggtacatcacatt |
206 |
Q |
| |
|
|||||| || ||||| |
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|
| T |
52820672 |
aaggtatattacatt |
52820658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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