View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_23 (Length: 273)
Name: NF1449_high_23
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 5192465 - 5192716
Alignment:
| Q |
7 |
gcataggccagtcgttgtgtctcatgcgtaagctagaaaaaatatacctaggcaagctcgtcacaccacaacgagatcgcgtagaatcatataagttaac |
106 |
Q |
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| T |
5192465 |
gcataggccagtcgttgtgtctcatgcgtaatctaaaaaaaatatacctaggcaagctcgtcacaccacaacgagatcgcctagaatcacacaagttaac |
5192564 |
T |
|
| Q |
107 |
gtcaaggttatatatagatgtcttcataaaaaatgtaggtatggatattagggattcaatggctttgatttcaaaactcaaaagaatgacaaagac--at |
204 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5192565 |
gtcaaggttatgtatagatgtcttcataaaaaatgtaggtatggattttagggattcaatggctttgatttcaaaactcaaaagaatgacaaagacatat |
5192664 |
T |
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| Q |
205 |
ataaaggtctaaaacaagataatatcctcaaagacaaacattaacaacaaaat |
257 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5192665 |
ataaaggtctaaaacaagataata-cctcaaagacaaacattaacaacaaaat |
5192716 |
T |
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