View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_3 (Length: 428)
Name: NF1449_high_3
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 26492561 - 26492956
Alignment:
| Q |
19 |
caggatgcatgtatgaatgatctaagcatgacatttggaacacaccttgacttcccactcaccatgtcataaacttttgtcttccaatataaatggggaa |
118 |
Q |
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| T |
26492561 |
caggatgcatgtatgaatgatctaagcatgacatttggaacacaccttgacttcccactcaccatgtcataaacttttgtcttccaatataaatggggaa |
26492660 |
T |
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| Q |
119 |
caagctcgacataagtaacaccattggctagtacatacatatttgtcatcatggcaaccatttgggaaccttcagcttctactcgttttcttccagctcc |
218 |
Q |
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| T |
26492661 |
caagctcgacataagtaacaccattggctagtacatacatatttgtcatcatggcaaccatttgggaaccttcagcttctactcgttttcttccagctcc |
26492760 |
T |
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| Q |
219 |
ttccaaagcatttgtgatttccttcatcgtatatgaaagagcaatcaaagaacccagtggcatggttaaattactgtcctttgaaacacagtccttccca |
318 |
Q |
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| T |
26492761 |
ttccaaagcatttgtgatttccttcatcgtatatgaaagagcaatcaaagaacccagtggcatggtt-aattactgtcctttgaaacacagtccttccca |
26492859 |
T |
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| Q |
319 |
agggacaaaagtgattggttcaaaatcagctagcgtcaaatcaccatagattagttacatgcttccatcataactagtctgtttcgtacttgtgcct |
415 |
Q |
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| T |
26492860 |
agggacaaaagtgattggttcaaaatcagcaagcgtcaaatcaccatagattagttacatgcttccatcataactagtctgtttcgtacttgtgcct |
26492956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 35662146 - 35662085
Alignment:
| Q |
211 |
ccagctccttccaaagcatttgtgatttccttcatcgtatatgaaagagcaatcaaagaacc |
272 |
Q |
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| T |
35662146 |
ccagctccttccaaagcattcgtaatttccttctccttatgagcaagagcaatcaaagaacc |
35662085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 53 - 337
Target Start/End: Original strand, 19079000 - 19079288
Alignment:
| Q |
53 |
ttggaacacaccttgacttcccactcaccatgtcataaacttttgtcttccaatataaatggggaacaagctcgacataagtaacaccattggctagtac |
152 |
Q |
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| T |
19079000 |
ttggaacacacctttacttcccactcaccatgtcataaactt--gtcttccaatttaaatggtttacaagctcagcctaagtaacaccgttggctagtac |
19079097 |
T |
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| Q |
153 |
atacatatttgtc------atcatggcaaccatttgggaaccttcagcttctactcgttttcttccagctccttccaaagcatttgtgatttccttcatc |
246 |
Q |
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| T |
19079098 |
atacatatttgtctgagacatcatcgtaaccttttgggaaccttcagcttctattggttttgttccagctccttccaaagcatttgtgatttccttcatc |
19079197 |
T |
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| Q |
247 |
gtatatgaaagagcaatcaaagaacccagtggcatggttaaattactgtcctttgaaacacagtccttcccaagggacaaaagtgattggt |
337 |
Q |
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| T |
19079198 |
gtatatgaaagagcaatcaaagaatccagtggcatggttaaattattgtcctttgaaccacagtccttcccaagggacataagtgattggt |
19079288 |
T |
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