View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_32 (Length: 236)
Name: NF1449_high_32
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14459625 - 14459404
Alignment:
| Q |
1 |
ttgtgttcaatatgttcaaaatccatttattaatgttttgatttgattcatgtatatgttgtatcaattcattcaagttctcagatgtttggctcatgag |
100 |
Q |
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| T |
14459625 |
ttgtgttcaatatgttcaaaatccatttattaatgttttgatttgattcatgtatatgttgtatcaattcattcaagttctcagatgtttgactcatgag |
14459526 |
T |
|
| Q |
101 |
aatttatttt-gaacgaatctattcagaattctttgattcttatcaatcttcatttgattggaattatagattgtatgattcttatcaatattcgtctgg |
199 |
Q |
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| T |
14459525 |
aatttatttttgaacgaatctattcagaattctttgattcttatcaatcttcatttgattggaattatagattgtatgattcttatcaatattcgtctga |
14459426 |
T |
|
| Q |
200 |
aattcattgatttgaaccaaag |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14459425 |
aattcattgatttgaaccaaag |
14459404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 30989634 - 30989565
Alignment:
| Q |
30 |
ttaatgttttgatttgattcatgtatatgttgtatcaattcattcaagttctcagatgtttggctcatga |
99 |
Q |
| |
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|||||||||||| ||||||||||||||| ||| ||| ||||||| |||||||| || ||||||||||||| |
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| T |
30989634 |
ttaatgttttgaattgattcatgtatattttgaatcgattcattgaagttctcggaagtttggctcatga |
30989565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 22723866 - 22723986
Alignment:
| Q |
30 |
ttaatgttttgatttgattcatgtatatgttgtatcaattcattcaagttctca-gatgtttggctcatgagaatttattttgaacgaatctattcagaa |
128 |
Q |
| |
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|||||||||||||| |||||||| |||||||| ||| ||||||||||||||||| | |||||| |||||| |||| ||||| ||||| ||||| || |
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| T |
22723866 |
ttaatgttttgattcgattcatgcatatgttgaatcgattcattcaagttctcagggtgtttgactcatggaaattaatttt----gaatcaattcaaaa |
22723961 |
T |
|
| Q |
129 |
ttctttgattcttatcaatcttcat |
153 |
Q |
| |
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|| |||| ||| ||||||||||||| |
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|
| T |
22723962 |
ttatttgtttcatatcaatcttcat |
22723986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 22541710 - 22541810
Alignment:
| Q |
13 |
tgttcaaaatccatttattaatgttttgatttgattcatgtatatgttgtatcaattcattcaagttctcagatgtttggctcatgagaatttattttga |
112 |
Q |
| |
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||||||||||| |||| || || ||||||| ||||||||||||| ||| ||| | ||||||||| ||| | ||||||||||||||| |||| ||||||| |
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| T |
22541710 |
tgttcaaaatcaattttctagtgatttgattcgattcatgtatattttgaatcgaatcattcaagctcttatatgtttggctcatgaaaattgattttga |
22541809 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
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|
| T |
22541810 |
a |
22541810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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