View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_34 (Length: 235)
Name: NF1449_high_34
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 7908991 - 7908796
Alignment:
| Q |
25 |
caaggataatctttggcaagcctgcttcacataccaactaaaaactatgaatgattcctccccattcagcaacatttgccataatgattccaatttttgc |
124 |
Q |
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| T |
7908991 |
caaggataatctttggccagcctgcttcacataccaactaaaaactatgaatgattcctccccattcagcaaaatttgccataatgattccaatttttgc |
7908892 |
T |
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| Q |
125 |
tctaaacccacttcaccaatccacttagtcatttctaccacaaaccttttctttagaagttccaattcaggtttggtccatacacccatccttatt |
220 |
Q |
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| T |
7908891 |
tctaaacccacttcaccaatccactttatcatttctaccacaaaccttttctttagaagttccaattcaggtttggtccatacacccatccttatt |
7908796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 7353021 - 7353097
Alignment:
| Q |
25 |
caaggataatctttggcaagcctgcttcacataccaactaaaaactatgaatgattcctccccattcagcaacattt |
101 |
Q |
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||||||||||||||| ||||| ||||| || |||||| ||||| |||||||| || || |||||||||| ||||| |
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| T |
7353021 |
caaggataatctttgtgaagccagcttcccaggccaactcaaaaccatgaatgactcttcaccattcagcagcattt |
7353097 |
T |
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