View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_39 (Length: 221)
Name: NF1449_high_39
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 38797572 - 38797448
Alignment:
| Q |
84 |
tatctcgttgcagagcttagtgttgtgggctcctccataagtcctttcacatgtctcataaactcttaacaaggatgactccctttcaagagaaaagcaa |
183 |
Q |
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| T |
38797572 |
tatctcgctgcagagcttagtgttgtgggctcctccataagtccttgcacatgtctcatagactcttaacaaggatgactccctttcaagagaaaagcaa |
38797473 |
T |
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| Q |
184 |
ggattactcaagaagcattaatatt |
208 |
Q |
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| T |
38797472 |
ggattactcaagaagcattaatatt |
38797448 |
T |
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