View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_4 (Length: 407)
Name: NF1449_high_4
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 38 - 391
Target Start/End: Original strand, 107587 - 107940
Alignment:
| Q |
38 |
agatgaacctgatcaatttacaagaactcacttgttattattgacacaaatcttaaacacatatatgtagaaataaccaaaacatcaatttaccaaaaga |
137 |
Q |
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| T |
107587 |
agatgaacctgatcaatttacaagaactcacttgttattattgacacaaatcttaaacacatatatgtagaaataaccaaaacatcaatttaccaaaaga |
107686 |
T |
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| Q |
138 |
gaacttgacacaataaggcttacaaacttcaaattctacaaaagaaatgaaagataacaagatttaggtgattgttgttaattacctgctaatatagatg |
237 |
Q |
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| T |
107687 |
gaacttgacacaataaggcttacaaacttcaaattctacaaaagaaatgaaagataacaagatttaggtgattgttgttaattacctgctaatatagatg |
107786 |
T |
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| Q |
238 |
aacttccttagaaaatgctgtgaggctctctatgttagggtccttctcaaactctattgtgctaataatttagctgtgtttgtttctctaccaatgtgac |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107787 |
aacttccttagaaaatgctgtgaggctctctatgttagggtccttctcaaactctattgtgctaataatttagctgtgtttgtttctctaccaatgtgac |
107886 |
T |
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| Q |
338 |
attaacttctatttttattcttagtttcttcccactttctttgtagtttcttcc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107887 |
attaacttctatttttattcttagtttcttcccactttctttgtagtttcttcc |
107940 |
T |
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