View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_40 (Length: 214)
Name: NF1449_high_40
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 2749353 - 2749550
Alignment:
| Q |
1 |
cgtgataattttacagactaggtctcctgctgtaaagtttctgtgttgtttcacctgtgtaacatatcgtgacaaagattttccattaaaattttgaaat |
100 |
Q |
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| T |
2749353 |
cgtgataattttacagactaggtttcctgctgtaaagtttctgtgttgtttcacctgtgtaacatatcgtgacaaagattttccattaaaattttgaaat |
2749452 |
T |
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| Q |
101 |
tgaacaatgacattaaaatttgaggatgccaaattccttgagagtgagacatttgatgaccatataacatgtttccttggataatgtgtcccaccaca |
198 |
Q |
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| T |
2749453 |
tgaacaatgacattaaaatttgaggatgccaaattacttgagagtgagacatttgatgaccatataacatgtttccttggataatgtgtcccaccaca |
2749550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 2714823 - 2714900
Alignment:
| Q |
91 |
attttgaaattgaacaatgacattaaaatttgaggatgccaaattccttgagagtgagacatttgatgaccatataacatgttt |
174 |
Q |
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| T |
2714823 |
attttgaagttgagcagtgacattagaatttgaggatgccaaattact------tgagacatttgatgaccatacaacatgttt |
2714900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 2726402 - 2726479
Alignment:
| Q |
91 |
attttgaaattgaacaatgacattaaaatttgaggatgccaaattccttgagagtgagacatttgatgaccatataacatgttt |
174 |
Q |
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| T |
2726402 |
attttgaagctgagcagtgacattagaatttgaggatgccaaattacttgag------acatttgatgaccatataacatgttt |
2726479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 2733598 - 2733667
Alignment:
| Q |
2 |
gtgataattttacagactaggtctcctgctgtaaagtttctgtgttgtttcacctgtgtaacatatcgtg |
71 |
Q |
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| T |
2733598 |
gtgataattttacgaaccaagtttcctgctgcaaagtttctatgttgtttcacgcttgtaacatatcgtg |
2733667 |
T |
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