View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_high_6 (Length: 383)
Name: NF1449_high_6
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 36084240 - 36083898
Alignment:
| Q |
7 |
tcatgctcatctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaataaacaaacactgaatttgagctagattgttt |
106 |
Q |
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| T |
36084240 |
tcatgctcatctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaataaacaaacactgaatttgagctagattgttt |
36084141 |
T |
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| Q |
107 |
ataatgttccattgtttgtttggtttttatgcatttataaatctttgtgcaaagtttcaaaatcatggtcgcggccacgcagtaatctttgatattgtag |
206 |
Q |
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| T |
36084140 |
ataatgttccattgtttgtttggtttttatgcatttataaatctttgtgcaaagtttcaaaatcatggtcgcggccacgcattaatatttgatattgtag |
36084041 |
T |
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| Q |
207 |
aaaatcacggataaatacaacttgtgtttccgcaatagcgatcacaatttgatgtccgtgacaatataacgttgaaaacgctgctatattttccgttgca |
306 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | | ||||||||| |||||||| |
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| T |
36084040 |
aaaattgcggataaatacaacttgtgtttccgcgatagcgatcacaatttgatgttggtgacaatataacgttgaaatcacggctatatttgccgttgca |
36083941 |
T |
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| Q |
307 |
gaccgttttttaaaaccttgaccaagatttaaggattagcttt |
349 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
36083940 |
gaccattttttaaaaccttgaccaagatttaaggactagcttt |
36083898 |
T |
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