View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_11 (Length: 356)
Name: NF1449_low_11
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 6858227 - 6858291
Alignment:
| Q |
286 |
gttaaatgacaattgtctaattttgcctataaactattaagtacgcgtgattagaacgatgtagc |
350 |
Q |
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| T |
6858227 |
gttaaatgacaattgtgtaattttgcctataaactattaagtacgcgtgattagaacgatgtagc |
6858291 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 6858124 - 6858190
Alignment:
| Q |
222 |
tgtagaattttatcaaaactccatcttcttcattttctctctcatcaaccaagttacactccatgtt |
288 |
Q |
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| T |
6858124 |
tgtagaattttatcaagattccatcttcttcattttctctctcatcaaccaagttacactccatgtt |
6858190 |
T |
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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 6857997 - 6858065
Alignment:
| Q |
91 |
ccttcgatttaaccgtctatgttattaaatgtcaacactgttcccctcaaaacaaataaaaacattgtca |
160 |
Q |
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| T |
6857997 |
ccttcgatttaaccgtctatgttattaaatgtcaac-ttgtccccctcaaaacaaattaaaacattgtca |
6858065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 6857920 - 6857970
Alignment:
| Q |
8 |
cgaagaatataaactagataaaattactcaattcttcttttaacttagata |
58 |
Q |
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| T |
6857920 |
cgaataatataaactagataaaattactcaattcttcttttaacttagata |
6857970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 1719861 - 1719905
Alignment:
| Q |
225 |
agaattttatcaaaactccatcttcttcattttctctctcatcaa |
269 |
Q |
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| T |
1719861 |
agaatttcatcaaaactttatcttcttcattttctctctcatcaa |
1719905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 43161506 - 43161464
Alignment:
| Q |
227 |
aattttatcaaaactccatcttcttcattttctctctcatcaa |
269 |
Q |
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| T |
43161506 |
aatttcatcaaaacttcatcttcttcattttctctctcgtcaa |
43161464 |
T |
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