View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_13 (Length: 349)
Name: NF1449_low_13
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 5608003 - 5607812
Alignment:
| Q |
130 |
gaattatttccactagatgctatttttccattctgtgttaccatgaaattgaaaggaactttcctatatgttatcatttggctgtaaaagacattcaaag |
229 |
Q |
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| T |
5608003 |
gaattatttccactaaatgctatttttccattctgtgttaccatgaaattgaaaggaactttcctatatgttatcatttaactgtaaaagacattcaaag |
5607904 |
T |
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| Q |
230 |
ctgtcttgcacttttcaagtaaacattttccttaaggacaatggaggacctacaaagattatgcttgatactaaaagtgattttgtaaacac |
321 |
Q |
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| T |
5607903 |
ctgtcttgcacttttcaaggaaacatttttcttagggacaatggaggacccacaaagattatgtttaatatgaaaagtgaatttgtaaacac |
5607812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 5568283 - 5568092
Alignment:
| Q |
130 |
gaattatttccactagatgctatttttccattctgtgttaccatgaaattgaaaggaactttcctatatgttatcatttggctgtaaaagacattcaaag |
229 |
Q |
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| T |
5568283 |
gaattatttccactagatgctatttttccattctgtgttaccatgaaattgaagagaactttcctatatgtaatcatttggctgtaaaagacattcaaag |
5568184 |
T |
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| Q |
230 |
ctgtcttgcacttttcaagtaaacattttccttaaggacaatggaggacctacaaagattatgcttgatactaaaagtgattttgtaaacac |
321 |
Q |
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| T |
5568183 |
ctgtcttgcacttttcaaggtaatatttttcttagggacgctgaaggacccacaaagattatgtttaatatgaaaagtgaatttgtaaacac |
5568092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 5561797 - 5561600
Alignment:
| Q |
130 |
gaattatttccactagatgctatttttccattctgtgttaccatgaaattgaaaggaactttcctatatgttatcatttggctgtaaaagac----attc |
225 |
Q |
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| T |
5561797 |
gaattatttccactggatgctatttttccattctgtgttaccatgaaattgaaaggaactttcctatatgttatcatttggctgtaaaagacattaattc |
5561698 |
T |
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| Q |
226 |
aaagctgtcttgcacttttcaagtaaacattttccttaaggac----aatggaggacctacaaagattatgcttgatactaaaagtgattttgtaaacac |
321 |
Q |
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| T |
5561697 |
aaagctgtcttgcacttttcaagtaaacatttt--ttagggacaattaatggaggacccacaaagattatgcttcatatgaaaagggattttctaaacac |
5561600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 5846660 - 5846748
Alignment:
| Q |
67 |
tgttgaaaattggttgagttagaggattcttgattccaatctcctacaatggttaaatgcttagaattatttccactagatgctatttt |
155 |
Q |
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| T |
5846660 |
tgttgaaaattggttgaattagaggtttcttgattccaatctcctacaatggtaaaatgtatatactatttttcactagatgctatttt |
5846748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 5567383 - 5567428
Alignment:
| Q |
188 |
ctttcctatatgttatcatttggctgtaaaagacattcaaagctgt |
233 |
Q |
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| T |
5567383 |
ctttcctatatgttatcatttggctgtaaaagacattcaaagctgt |
5567428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 5884730 - 5884818
Alignment:
| Q |
67 |
tgttgaaaattggttgagttagaggattcttgattccaatctcctacaatggttaaatgcttagaattatttccactagatgctatttt |
155 |
Q |
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| T |
5884730 |
tgttgagaattggttgaattagaggtttcttgattccaatctcctacaatggtaaaatgcatttactatttttcactagatgctatttt |
5884818 |
T |
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