View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_15 (Length: 341)
Name: NF1449_low_15
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 5884457 - 5884141
Alignment:
| Q |
13 |
actaacaacctctttaattatccctctaaacaaccttgcttcctcaacatcactcacatcacaatcatttccatagtatcttttccccgacaccattctc |
112 |
Q |
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| T |
5884457 |
actaacaacctctttaattatccctctaaacaaccttgcttcctcaacatcactcacatcacaatcatttccatagtatcttttccccgacaccattctc |
5884358 |
T |
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| Q |
113 |
attatagtattaaatgtcatttccgaaaacataggtctaagttccacttcggtgaaaccattgtatgatttttgtgctagcttttgtattagtctcgtaa |
212 |
Q |
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| T |
5884357 |
attatagtattaaatgtcatttccgaaaacataggtctaagttccacttcggtgaaaccattgtatgatttttgtgctagcttttgtattagtctcataa |
5884258 |
T |
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| Q |
213 |
tctcatctcttcttatttccaagaaggaatttaaacgatgagatgagagtatttcaattgataatattcgtcgaagattgcgcaaattgtcacgataagt |
312 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |
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| T |
5884257 |
tctcatctcttcgtatttccaagaaggaatttaaacgatgagatgagagtatttcaattgataatattcgtcgaagattgcgccaatggtcaccataagg |
5884158 |
T |
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| Q |
313 |
tgattgtgctaccgtag |
329 |
Q |
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| T |
5884157 |
tgattgtgctaccgtag |
5884141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 39586702 - 39586782
Alignment:
| Q |
60 |
catcactcacatcacaatcatttccatagtatcttttccccgacaccattctcattatagtattaaatgtcatttccgaaa |
140 |
Q |
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| T |
39586702 |
catcactcacatcacaatcctcaccataatatctctttccagatatcattctcattatcgtgttaaaagtcatctccgaaa |
39586782 |
T |
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