View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1449_low_16 (Length: 327)
Name: NF1449_low_16
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 107 - 311
Target Start/End: Original strand, 31983735 - 31983938
Alignment:
| Q |
107 |
ttgtgtccattatatgatatattgatgaggaacgaaaaacacctatttttattaaacataacattagaattgaataaaatatttattgtgtcaaaattta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31983735 |
ttgtgtccattatatgatatattgatgaggaacgaaaa-cacctatttttattaaacataacattagaattgaataaaatatttattgtgtcaaaattta |
31983833 |
T |
|
| Q |
207 |
attttaccgattgtacaatgactcctcaaaagaaaaacgtttgtacaactctacatttccatttatgcaaatgtgaatgtgacatgaaaaaggaggatga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31983834 |
attttaccgattgtacaatgactcctcaaaagaaaaacgtttgtacaactctacatttccatttatgcaaatgtgaatgtgacatgaaaaaggaggatga |
31983933 |
T |
|
| Q |
307 |
aaact |
311 |
Q |
| |
|
||||| |
|
|
| T |
31983934 |
aaact |
31983938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 31983656 - 31983712
Alignment:
| Q |
10 |
aagaatatcagtgtttcttttattattaaaaagaaatacagaaattgtgtattcaga |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31983656 |
aagaatatcagtgtttcttttattattaaaaagaaatacagaaattgtgtattcaga |
31983712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University