View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1449_low_18 (Length: 300)
Name: NF1449_low_18
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 33119924 - 33120196
Alignment:
| Q |
9 |
gattggtacacacaaggatgtccaagcaaaataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33119924 |
gattggtacacacaaggatgtccaagcaatataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttc |
33120023 |
T |
|
| Q |
109 |
catgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctca |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120024 |
catgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctca |
33120123 |
T |
|
| Q |
209 |
atcctttttatctgtcatagaacttcttgggactgcatggacattcctggcttttggagtaattagttgtatg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120124 |
atcctttttatctgtcatagaacttcttgggactgcatggacattcctggcttttggagtaattagttgtatg |
33120196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 33116715 - 33116924
Alignment:
| Q |
12 |
tggtacacacaaggatgtccaagcaaaataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccat |
111 |
Q |
| |
|
||||| |||||||||||||| |||||| | || ||| | ||| | |||| || || |||| ||| | ||||||||||| |||||||| |||||||||| |
|
|
| T |
33116715 |
tggtatacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctctatatactgttcttttcacctggaatggggactgttccat |
33116814 |
T |
|
| Q |
112 |
gggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatc |
211 |
Q |
| |
|
|||| || |||||||| || ||||||||||||||||||||| | ||||||||||| || ||||||| || ||| |||| ||||| |||||||||||||| |
|
|
| T |
33116815 |
gggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatc |
33116914 |
T |
|
| Q |
212 |
ctttttatct |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
33116915 |
ctttttatct |
33116924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 21492025 - 21491884
Alignment:
| Q |
70 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagc |
169 |
Q |
| |
|
||||||| |||||||| || || ||||||||||| |||||||||||| | ||||||||||| || || || ||||||||||||||||||||||||||||| |
|
|
| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
|
| Q |
170 |
atcaacaacagtgtgggtctctaacctcattgtttctcaatc |
211 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
21491925 |
atcaacaacagtgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
79 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
176 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| | |||||||||||||| || ||||| || |||||||||||||||||||| || |||||| |
|
|
| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University