View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_20 (Length: 293)
Name: NF1449_low_20
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 36798651 - 36798898
Alignment:
| Q |
18 |
ccatggttacaacaaacatcctaactcaataaagatttatcctaaaaccaattgttgtgtttactgctgcaaaaatcaacacgatcattgttgcatttga |
117 |
Q |
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| T |
36798651 |
ccatggttacaacaaacatcctaactcaataaagatttatcctaaaaccaattgttgtgtttactgctgcaaaaatcaacacgatcattgttgcatttga |
36798750 |
T |
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| Q |
118 |
tgttgccttgttatcacactatgtggacctgctcatctgtcgcaacatctttctattaagaagctaccaatatgtgagtgtgaaaaatatgacataattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36798751 |
tgttgccttgttatcacactatgtggacctgctcatctgtcgcaacatctttctattaagaagctaccaatatgtgagtgtgaaaaatatgacataattt |
36798850 |
T |
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| Q |
218 |
aaacatgcatatatgtattttatgcatgtactttagttaaggcctttg |
265 |
Q |
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| T |
36798851 |
aaacatgcatatatgtattttatgcatgtactttagttaaggcctttg |
36798898 |
T |
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