View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_25 (Length: 274)
Name: NF1449_low_25
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 9440626 - 9440872
Alignment:
| Q |
11 |
ccctttgtcatcatcctttttcttgttaaatgggaaaggtctaaaccctttctgaagcaatttctcaacctcttcaaactgaagacctttggtttcaggc |
110 |
Q |
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| T |
9440626 |
ccctttgtcatcatcctttttcttgttaaatgggaaaggtctaaaccctttctgaagcaatttctcaacctcctcaaactgaagacctttggtttcaggc |
9440725 |
T |
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| Q |
111 |
accaacaaataaatggctacaaatccaatcaaagagaaccctgcaaaggtgaggaatgttccagtagttcctagagtctttatcatgcttaagaatgact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9440726 |
accaacaaataaatggctacaaatccaatcaaagagaaccctgcaaaggtgaggaatgttccagtagttcctagagtctttatcatgcttaagaatgact |
9440825 |
T |
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| Q |
211 |
cactcataattaaattagcacaccagttgcaaactgctgctatacct |
257 |
Q |
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| T |
9440826 |
cactcataattacattagcacaccagttgaaaactgctgctatacct |
9440872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 9451852 - 9452098
Alignment:
| Q |
11 |
ccctttgtcatcatcctttttcttgttaaatgggaaaggtctaaaccctttctgaagcaatttctcaacctcttcaaactgaagacctttggtttcaggc |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
9451852 |
ccctttgtcgtcatcctttttcttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttggtttcaggc |
9451951 |
T |
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| Q |
111 |
accaacaaataaatggctacaaatccaatcaaagagaaccctgcaaaggtgaggaatgttccagtagttcctagagtctttatcatgcttaagaatgact |
210 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
9451952 |
actaacaaataaatggctacaaggccaatcaaagagaaccctgcaaagaggaggaatgttccggtagttcctagagcctttatcatgctcaagaatgact |
9452051 |
T |
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| Q |
211 |
cactcataattaaattagcacaccagttgcaaactgctgctatacct |
257 |
Q |
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|||||| ||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
9452052 |
cactcacaattagattggcacaccagttgaaaactgctgctatacct |
9452098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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