View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1449_low_27 (Length: 270)

Name: NF1449_low_27
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1449_low_27
NF1449_low_27
[»] chr2 (9 HSPs)
chr2 (11-270)||(35889912-35890171)
chr2 (23-220)||(35554374-35554571)
chr2 (150-212)||(35554511-35554573)
chr2 (216-262)||(35546015-35546062)
chr2 (150-213)||(35889766-35889829)
chr2 (23-147)||(35889768-35889904)
chr2 (218-258)||(35887218-35887259)
chr2 (56-85)||(34989503-34989532)
chr2 (229-270)||(35554735-35554776)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 35889912 - 35890171
Alignment:
Q  11 gtagcatagggtgatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaaggtgatgatgtaacaacgaatcagggaa 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35889912 gtagcattgggtgatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaaggtgatgatgtaacaacgaatcagggaa 35890011  T
Q  111 gcgcaaaaatggaggagaatcatcagaaagaaagtggcgaagatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaa 210  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890012 gtgcaaaaatggaggagaatcatcagaaagaaagtggcgaagatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaa 35890111  T
Q  211 agatgttagttagttacatattccttcttagctagctcttcattcatactataaatataa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890112 agatgttagttagttacatattccttcttagctagctcttcattcatactataaatataa 35890171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 35554571 - 35554374
Alignment:
Q  23 gatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaaggtgatgatgtaacaacgaatcagggaagcgcaaaaatgg 122  Q
    ||||||| | || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  35554571 gatgatgcagcaatgaatgagggaggcactggtagtgattcttcaactactgatcagaaaggtgatgatgtagcaatgaatcagggaagctcaaaaatgg 35554472  T
Q  123 aggagaatcatcagaaagaaagtggcgaagatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaaagatgttagt 220  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35554471 aggaggatcatcagaaagaaagtggtgaagattatgtagcattgaatgagggaggcactggcagtaattcttcaacttctcatcagaaagatgttagt 35554374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 35554573 - 35554511
Alignment:
Q  150 aagatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaaag 212  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||| || |||||||||    
T  35554573 aagatgatgcagcaatgaatgagggaggcactggtagtgattcttcaactactgatcagaaag 35554511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 35546062 - 35546015
Alignment:
Q  216 ttagttagttacat-attccttcttagctagctcttcattcatactat 262  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  35546062 ttagtgagttacatcattccttcttagctagctcttcattcatactat 35546015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 35889766 - 35889829
Alignment:
Q  150 aagatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaaaga 213  Q
    ||||||||| |||| |||| |||||||||||||| ||||||||||||||| || ||| ||||||    
T  35889766 aagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaaga 35889829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 35889768 - 35889904
Alignment:
Q  23 gatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaa------------ggtgatgatgtaacaacgaatcagggaa 110  Q
    ||||||| | || |||| |||||||||| ||| |||||||||||||||||||||| ||||            |||||||||| | ||| ||||| || |     
T  35889768 gatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatgaatccggaag 35889867  T
Q  111 gcgcaaaaatggaggagaatcatcagaaagaaagtgg 147  Q
    ||| ||||||||||||| |||||||||||||||||||    
T  35889868 gcgtaaaaatggaggaggatcatcagaaagaaagtgg 35889904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 35887218 - 35887259
Alignment:
Q  218 agttagttacata-ttccttcttagctagctcttcattcata 258  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  35887218 agttagttacatagttccttcttagctagctcttcattcata 35887259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 34989503 - 34989532
Alignment:
Q  56 agtgattcttcaactactgatcagaaaggt 85  Q
    ||||||||||||||||||||||||||||||    
T  34989503 agtgattcttcaactactgatcagaaaggt 34989532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 35554776 - 35554735
Alignment:
Q  229 tattccttcttagctagctcttcattcatactataaatataa 270  Q
    ||||||||||| |||| |||||||||| ||||||||||||||    
T  35554776 tattccttcttcgctaactcttcattcgtactataaatataa 35554735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University