View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1449_low_3 (Length: 449)

Name: NF1449_low_3
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1449_low_3
NF1449_low_3
[»] chr7 (11 HSPs)
chr7 (17-214)||(5688791-5688988)
chr7 (215-314)||(5961062-5961164)
chr7 (311-360)||(5956387-5956436)
chr7 (389-449)||(5956283-5956343)
chr7 (411-449)||(27093424-27093462)
chr7 (411-449)||(27184839-27184877)
chr7 (413-449)||(3554519-3554555)
chr7 (410-449)||(8160426-8160465)
chr7 (410-449)||(38143233-38143272)
chr7 (413-449)||(3938153-3938189)
chr7 (390-441)||(22868060-22868112)
[»] chr1 (11 HSPs)
chr1 (408-449)||(12713335-12713376)
chr1 (408-449)||(12717426-12717467)
chr1 (405-449)||(16164320-16164364)
chr1 (414-449)||(2288181-2288216)
chr1 (410-449)||(6427360-6427399)
chr1 (410-449)||(14332652-14332691)
chr1 (407-449)||(40181881-40181923)
chr1 (408-449)||(12707881-12707922)
chr1 (412-449)||(34257922-34257959)
chr1 (412-449)||(41017416-41017453)
chr1 (408-448)||(8842722-8842762)
[»] chr4 (8 HSPs)
chr4 (410-446)||(17344513-17344549)
chr4 (410-449)||(13134460-13134499)
chr4 (411-449)||(7214533-7214571)
chr4 (406-449)||(903932-903975)
chr4 (410-449)||(33950146-33950185)
chr4 (407-449)||(21539874-21539916)
chr4 (412-449)||(18491891-18491928)
chr4 (417-449)||(17446081-17446113)
[»] chr8 (9 HSPs)
chr8 (407-449)||(38278182-38278224)
chr8 (410-449)||(4786348-4786387)
chr8 (410-449)||(11803269-11803308)
chr8 (410-449)||(14731722-14731761)
chr8 (410-449)||(20785475-20785514)
chr8 (410-449)||(31236587-31236626)
chr8 (410-449)||(39954289-39954328)
chr8 (408-449)||(34201054-34201095)
chr8 (413-449)||(31580140-31580176)
[»] chr6 (9 HSPs)
chr6 (405-449)||(17302357-17302401)
chr6 (410-449)||(7086805-7086844)
chr6 (410-449)||(9617444-9617483)
chr6 (410-449)||(9629393-9629432)
chr6 (410-449)||(30866154-30866193)
chr6 (394-448)||(7752135-7752189)
chr6 (410-447)||(7377991-7378028)
chr6 (412-449)||(9658889-9658926)
chr6 (413-449)||(32511679-32511715)
[»] scaffold0110 (1 HSPs)
scaffold0110 (410-449)||(28860-28899)
[»] chr5 (5 HSPs)
chr5 (410-449)||(17925182-17925221)
chr5 (410-449)||(23012418-23012457)
chr5 (411-449)||(35017047-35017085)
chr5 (407-441)||(42029770-42029804)
chr5 (413-449)||(30098336-30098372)
[»] chr3 (6 HSPs)
chr3 (410-449)||(11313810-11313849)
chr3 (410-449)||(32804550-32804589)
chr3 (410-441)||(48202279-48202310)
chr3 (410-449)||(49505164-49505203)
chr3 (411-449)||(9624651-9624689)
chr3 (413-449)||(47362572-47362608)
[»] chr2 (2 HSPs)
chr2 (410-449)||(2665898-2665937)
chr2 (415-449)||(18255995-18256029)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 5688988 - 5688791
Alignment:
Q  17 ataattcccctaactggctggacatgttgtgatgagaatcaatggcaattaggttctgccataatggtcacaagtgttgaaccaaaagttagatatgaat 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5688988 ataattcccctaactggctggacatattgtgatgagaatcaatggcaattaggttctgccataatggtcacaagtgttgatccaaaagttagatatgaat 5688889  T
Q  117 taatcatcattaaatgcaatagtctagaggctaaagattgggatttgtgtataaaatgagaaaggtataaggaactaggagcaagaatttttggatcc 214  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688888 taatcataattaaatgcaatagtctagaggctaaagatagggatttgtgtataaaatgagaaaggtataaggaactaggagcaagaatttttggatcc 5688791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 5961164 - 5961062
Alignment:
Q  215 atcataactaaattctgca---agcattttcttgttgttacgtgtcttaaaaggtaaatgttaagataatgaactt-gaggaatatgagtaaccccttaa 310  Q
    |||||||||||||||||||   ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  5961164 atcataactaaattctgcattaagctttttcttgttgttacgtgtcttaaa-ggtaaatgttaagataatgaactttgaggaatatgagtaaccccttaa 5961066  T
Q  311 taat 314  Q
    ||||    
T  5961065 taat 5961062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 5956436 - 5956387
Alignment:
Q  311 taataatagtttggtattggagggcagccgttggtggaaataggtagcaa 360  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5956436 taatgatagtttggtattggagggcagccgttggtggaaataggtagcaa 5956387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 5956343 - 5956283
Alignment:
Q  389 atgtgttgtgttcgatatgatacatataattacattaaattatgtgattttcttaaattat 449  Q
    |||||| |||| |||||| | |||||||||||||||||||||| ||||||| |||||||||    
T  5956343 atgtgtcgtgtccgatataacacatataattacattaaattatttgatttttttaaattat 5956283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 27093424 - 27093462
Alignment:
Q  411 catataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  27093424 catataattacactaaattatgtgattttcttaaattat 27093462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 27184877 - 27184839
Alignment:
Q  411 catataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  27184877 catataattacactaaattatgtgattttcttaaattat 27184839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 449
Target Start/End: Original strand, 3554519 - 3554555
Alignment:
Q  413 tataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||||||||| |||||||||||||||    
T  3554519 tataattacattaaattatgtaattttcttaaattat 3554555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 8160465 - 8160426
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  8160465 acatataattacactaaattatgtaattttcttaaattat 8160426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 38143272 - 38143233
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  38143272 acatataattacattaaattatgtgattttttcaaattat 38143233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 3938189 - 3938153
Alignment:
Q  413 tataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||| |||||||||||||| |||||||||    
T  3938189 tataattacattgaattatgtgatttttttaaattat 3938153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 22868112 - 22868060
Alignment:
Q  390 tgtgttgtgttcgata-tgatacatataattacattaaattatgtgattttct 441  Q
    ||||||||||| |||| ||| ||||||||||||| | ||||||||||||||||    
T  22868112 tgtgttgtgtttgatactgacacatataattacactgaattatgtgattttct 22868060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 12713335 - 12713376
Alignment:
Q  408 atacatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  12713335 atacatataattacactaaattatgtgattttcttaaattat 12713376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 12717426 - 12717467
Alignment:
Q  408 atacatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  12717426 atacatataattacactaaattatgtgattttcttaaattat 12717467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 16164320 - 16164364
Alignment:
Q  405 atgatacatataattacattaaattatgtgattttcttaaattat 449  Q
    |||| |||||||||||||||||||||||||||||| | |||||||    
T  16164320 atgacacatataattacattaaattatgtgattttttcaaattat 16164364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 2288181 - 2288216
Alignment:
Q  414 ataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2288181 ataattacattgaattatgtgattttcttaaattat 2288216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 6427399 - 6427360
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  6427399 acatataattacattgaattatgtgattttctcaaattat 6427360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 14332652 - 14332691
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  14332652 acatataattacactaaattatgtgattttctcaaattat 14332691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 449
Target Start/End: Complemental strand, 40181923 - 40181881
Alignment:
Q  407 gatacatataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||||||| | |||||||||||||||| |||||||    
T  40181923 gatacatataattacactgaattatgtgattttctcaaattat 40181881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 12707881 - 12707922
Alignment:
Q  408 atacatataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||| || |||||||| |||||||||||||||||    
T  12707881 atacatataattgcactaaattatatgattttcttaaattat 12707922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 34257922 - 34257959
Alignment:
Q  412 atataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  34257922 atataattacactaaattatgtgattttattaaattat 34257959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 41017416 - 41017453
Alignment:
Q  412 atataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  41017416 atataattacattaaattatgtcattttctcaaattat 41017453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 8842722 - 8842762
Alignment:
Q  408 atacatataattacattaaattatgtgattttcttaaatta 448  Q
    |||||||||||||||||||||||| || |||||| ||||||    
T  8842722 atacatataattacattaaattatatgtttttctcaaatta 8842762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 17344549 - 17344513
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaat 446  Q
    |||||||||||||||||||||||||||||||||||||    
T  17344549 acatataattacattaaattatgtgattttcttaaat 17344513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 13134499 - 13134460
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  13134499 acatataattacactaaattatgtgattttcttaaattat 13134460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 7214533 - 7214571
Alignment:
Q  411 catataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  7214533 catataattacattaaattatgtgattttctcaaattat 7214571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 903975 - 903932
Alignment:
Q  406 tgatacatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||||| | |||||||||||||||| |||||||    
T  903975 tgatacatataattacactgaattatgtgattttctcaaattat 903932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 33950185 - 33950146
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  33950185 acatatgattacattaaattatgtgattttctcaaattat 33950146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 21539874 - 21539916
Alignment:
Q  407 gatacatataattacattaaattatgtgattttcttaaattat 449  Q
    |||| ||||||||||| |||||||| |||||||||||||||||    
T  21539874 gatatatataattacactaaattatatgattttcttaaattat 21539916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 18491891 - 18491928
Alignment:
Q  412 atataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  18491891 atataattacattaaattatatgatttttttaaattat 18491928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 17446113 - 17446081
Alignment:
Q  417 attacattaaattatgtgattttcttaaattat 449  Q
    |||||| ||||||||||||||||||||||||||    
T  17446113 attacactaaattatgtgattttcttaaattat 17446081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 38278182 - 38278224
Alignment:
Q  407 gatacatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  38278182 gatacgtataattatattaaattatgtgattttcttaaattat 38278224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 4786348 - 4786387
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  4786348 acatataattacactgaattatgtgattttcttaaattat 4786387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 11803308 - 11803269
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  11803308 acatataattacactgaattatgtgattttcttaaattat 11803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 14731761 - 14731722
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  14731761 acatataattacactaaattatgtgattttctcaaattat 14731722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 20785475 - 20785514
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  20785475 acatataattacattaaattatgtgatttcctcaaattat 20785514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 31236587 - 31236626
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  31236587 acatataattacattgaattatgtgattttctcaaattat 31236626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 39954289 - 39954328
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  39954289 acatataattacactaaattatgtgattttctcaaattat 39954328  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 34201054 - 34201095
Alignment:
Q  408 atacatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||||| |||||||| ||||||| |||||||    
T  34201054 atacatataattacattgaattatgtcattttctcaaattat 34201095  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 449
Target Start/End: Original strand, 31580140 - 31580176
Alignment:
Q  413 tataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||| | ||||||||||||||||||||||||    
T  31580140 tataattacactcaattatgtgattttcttaaattat 31580176  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 17302401 - 17302357
Alignment:
Q  405 atgatacatataattacattaaattatgtgattttcttaaattat 449  Q
    |||| |||||||||||||  |||||||||||||||||||||||||    
T  17302401 atgacacatataattacacaaaattatgtgattttcttaaattat 17302357  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 7086844 - 7086805
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  7086844 acatataattacactaaattatgtgattttctcaaattat 7086805  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 9617483 - 9617444
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  9617483 acatataattacattgaattatgtgattttctcaaattat 9617444  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 9629432 - 9629393
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  9629432 acatataattacattgaattatgtgattttctcaaattat 9629393  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 30866154 - 30866193
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  30866154 acatataattacattgaattatgtgattttctcaaattat 30866193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 7752135 - 7752189
Alignment:
Q  394 ttgtgttcgatatgatacatataattacattaaattatgtgattttcttaaatta 448  Q
    |||||||||| | || || ||||||| ||||||||||||| ||||||||||||||    
T  7752135 ttgtgttcgacacgacacctataattgcattaaattatgtcattttcttaaatta 7752189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 7378028 - 7377991
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaatt 447  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  7378028 acatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 9658926 - 9658889
Alignment:
Q  412 atataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  9658926 atataattacactgaattatgtgattttcttaaattat 9658889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 449
Target Start/End: Original strand, 32511679 - 32511715
Alignment:
Q  413 tataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||| | ||||||||||||||||||||||||    
T  32511679 tataattacactgaattatgtgattttcttaaattat 32511715  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 28899 - 28860
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  28899 acatataattacattgaattatgcgattttcttaaattat 28860  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 17925182 - 17925221
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  17925182 acatattattacattgaattatgtgattttcttaaattat 17925221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 23012418 - 23012457
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  23012418 acatataattacattaaattatatgattttctcaaattat 23012457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 35017085 - 35017047
Alignment:
Q  411 catataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  35017085 catataattacactaaattatgtgattttctcaaattat 35017047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 441
Target Start/End: Complemental strand, 42029804 - 42029770
Alignment:
Q  407 gatacatataattacattaaattatgtgattttct 441  Q
    |||||||||||||||||| ||||||||||||||||    
T  42029804 gatacatataattacattgaattatgtgattttct 42029770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 30098372 - 30098336
Alignment:
Q  413 tataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||| |||||||||||||||| |||||||    
T  30098372 tataattacattgaattatgtgattttctcaaattat 30098336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 11313810 - 11313849
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  11313810 acatataattacactaaattatgtgattttctcaaattat 11313849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 32804550 - 32804589
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  32804550 acatataattacactaaattatgtgattttctcaaattat 32804589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 441
Target Start/End: Original strand, 48202279 - 48202310
Alignment:
Q  410 acatataattacattaaattatgtgattttct 441  Q
    ||||||||||||||||||||||||||||||||    
T  48202279 acatataattacattaaattatgtgattttct 48202310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 49505164 - 49505203
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  49505164 acatataattacactaaattatgtgattttctcaaattat 49505203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 9624689 - 9624651
Alignment:
Q  411 catataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  9624689 catataattacattgaattatgtgattttctcaaattat 9624651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 47362608 - 47362572
Alignment:
Q  413 tataattacattaaattatgtgattttcttaaattat 449  Q
    |||||||||||| |||||||| |||||||||||||||    
T  47362608 tataattacattcaattatgtaattttcttaaattat 47362572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 2665898 - 2665937
Alignment:
Q  410 acatataattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  2665898 acatataattacactaaattatgtgattttctaaaattat 2665937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 18255995 - 18256029
Alignment:
Q  415 taattacattaaattatgtgattttcttaaattat 449  Q
    ||||||||||||||||||||||||| |||||||||    
T  18255995 taattacattaaattatgtgatttttttaaattat 18256029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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