View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1449_low_30 (Length: 253)
Name: NF1449_low_30
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_30 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 91 - 253
Target Start/End: Complemental strand, 14460032 - 14459870
Alignment:
| Q |
91 |
cgtgcatatctcttcccatacttttagcccctagtcatccatgatcttaaatttcttcaaaatgtcttgtatgtcaagttacattttgtgtttcattttg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14460032 |
cgtgcatatctcttcccatacttttagcccctagtcatccatgatcttaaatttcttcaaagtgtcttgtatgtcaagttacattttgtgtttcattttg |
14459933 |
T |
|
| Q |
191 |
tggcaaaactctttgatctatacctttgaattgtatcacaaattattgattcgtataatactt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459932 |
tggcaaaactctttgatctatacctttgaattgtatcacaaattattgattcgtataatactt |
14459870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 30989844 - 30989775
Alignment:
| Q |
120 |
cctagtcatccatgatcttaaatttcttcaaaatgtcttgtatgtcaagttacattttgtgtttcatttt |
189 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||||| ||||| || |||||||| ||||||||| |
|
|
| T |
30989844 |
cctagccatccatgatcttaattttcttcaaagcgtcttgtgcgtcaaatttcattttgtatttcatttt |
30989775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 30986625 - 30986557
Alignment:
| Q |
120 |
cctagtcatccatgatcttaaatttcttcaaaatgtcttgtatgtcaagttacattttgtgtttcattt |
188 |
Q |
| |
|
||||| ||||| | ||||||| | |||||||| |||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
30986625 |
cctagccatccttaatcttaagtctcttcaaagtgtcctgtgtgtcaagtatcattttgtgtttcattt |
30986557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 22884214 - 22884328
Alignment:
| Q |
120 |
cctagtcatccatgatcttaaatttcttcaaaatgtcttgtatgtcaagttacattttgtgtttcattttgtggcaaaactctttgatctatacctttga |
219 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
22884214 |
cctagccatccatgatcttaagtttcttcaaagtgtctcgtctgtcaagtttcattttgtgtttcattttgtggcaaaactcatttcttcgtacctttga |
22884313 |
T |
|
| Q |
220 |
attgtatcacaaatt |
234 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
22884314 |
atcgtatcacaaatt |
22884328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 121 - 234
Target Start/End: Original strand, 22916943 - 22917056
Alignment:
| Q |
121 |
ctagtcatccatgatcttaaatttcttcaaaatgtcttgtatgtcaagttacattttgtgtttcattttgtggcaaaactctttgatctatacctttgaa |
220 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||| || ||| ||||||||| |
|
|
| T |
22916943 |
ctagccatccatgatcttaagtttcttcaaagtgtcttgtgtgtcaagtttcattttgtgtttcagtttgtggcaaaactcatttctctgaacctttgaa |
22917042 |
T |
|
| Q |
221 |
ttgtatcacaaatt |
234 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
22917043 |
tcatatcacaaatt |
22917056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 22902112 - 22902172
Alignment:
| Q |
120 |
cctagtcatccatgatcttaaatttcttcaaaatgtcttgtatgtcaagttacattttgtg |
180 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
22902112 |
cctagccatccatgatcttaagtttcttcaaagtgtctcgtctgtcaagtttcattttgtg |
22902172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 22902160 - 22902214
Alignment:
| Q |
180 |
gtttcattttgtggcaaaactctttgatctatacctttgaattgtatcacaaatt |
234 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
22902160 |
gtttcattttgtggcaaaactcatttctccgtacctttgaatcgtatcacaaatt |
22902214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University