View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_33 (Length: 249)
Name: NF1449_low_33
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_33 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 24950411 - 24950296
Alignment:
| Q |
134 |
aactattaactggttggtcattcgaaaggatattacatatgagtgtaataactatacccttgagaattttgcgatcatctcgcttgatttggggactgag |
233 |
Q |
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| T |
24950411 |
aactcttaattggttggtcattcgaaatgatattacatatgattggaataatcatactgttgagaattttgcgatcatctcacttgattcgaggacagag |
24950312 |
T |
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| Q |
234 |
acatacacacaattgt |
249 |
Q |
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| T |
24950311 |
acatacagacaattgt |
24950296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 6921565 - 6921517
Alignment:
| Q |
201 |
tttgcgatcatctcgcttgatttggggactgagacatacacacaattgt |
249 |
Q |
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| T |
6921565 |
tttgtgatgatctcacttgatttggggacagagacatatacacaattgt |
6921517 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 24383786 - 24383848
Alignment:
| Q |
8 |
gagcagagatgcaaggatttttagtttgggtgataatatatggagaagtgttccaagttttcc |
70 |
Q |
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| T |
24383786 |
gagcagagatgcaaggatttttagtttgggtgataatatttggaaaagtattccaagttttcc |
24383848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 24391252 - 24391308
Alignment:
| Q |
193 |
ttgagaattttgcgatcatctcgcttgatttggggactgagacatacacacaattgt |
249 |
Q |
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| T |
24391252 |
ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgt |
24391308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 14076550 - 14076598
Alignment:
| Q |
201 |
tttgcgatcatctcgcttgatttggggactgagacatacacacaattgt |
249 |
Q |
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| T |
14076550 |
tttgtgattatctcacttgatttggggactgagacatatacacaattgt |
14076598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 14386578 - 14386626
Alignment:
| Q |
201 |
tttgcgatcatctcgcttgatttggggactgagacatacacacaattgt |
249 |
Q |
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| T |
14386578 |
tttgtgattatctcacttgatttggggactgagacatatacacaattgt |
14386626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 24391081 - 24391126
Alignment:
| Q |
25 |
tttttagtttgggtgataatatatggagaagtgttccaagttttcc |
70 |
Q |
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| T |
24391081 |
tttttagtttgggtgataatatttggagaaatattcaaagttttcc |
24391126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 24384862 - 24384910
Alignment:
| Q |
25 |
tttttagtttgggtgataatatatggagaagtgttccaagttttcctga |
73 |
Q |
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| T |
24384862 |
tttttagtttgggagatgatatttggagaagtattcaaagttttcctga |
24384910 |
T |
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