View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_38 (Length: 235)
Name: NF1449_low_38
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9433364 - 9433145
Alignment:
| Q |
1 |
cctccaccaccacttccaccgtcacactccggcgacggtaacgtcgccaaccgttgaagctcaccggagatatcactactacaagctgaataagcatatt |
100 |
Q |
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| T |
9433364 |
cctccaacaccacttccaccgtcacactccggcgacggtaacgtcgccaaccgttgaagctcaccggagatatcactactacaagctgaataagcatatt |
9433265 |
T |
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| Q |
101 |
cactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttggaagcgagttcaccgagacggaggtcgac |
200 |
Q |
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| T |
9433264 |
cactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttggaagcgagttcaccgagacggaggtcgac |
9433165 |
T |
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| Q |
201 |
gacggaatcggtgagatttt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
9433164 |
gacggaatcggtgagatttt |
9433145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 3834278 - 3834138
Alignment:
| Q |
82 |
caagctgaataagcatattcactaaaagcttgagaaagatctagaaggtctt-gttcagaagttgatgattttccggatttgtgattcttggaagcgagt |
180 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||||| ||| |
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| T |
3834278 |
caagctgaataagcatattcactaaaagcttgagaacgatctagaagctcttagttcaaaagttgatgattttccatatttgttattcttggaagcaagt |
3834179 |
T |
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| Q |
181 |
tcaccgagacggaggtcgacgacggaatcggtgagattttt |
221 |
Q |
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| T |
3834178 |
tcgccgagacagaggtcgacgacggaatcgatgagactttt |
3834138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 48677697 - 48677533
Alignment:
| Q |
57 |
aagctcaccggagatatcactactacaagctgaataagcatattcactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccg |
156 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |
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| T |
48677697 |
aagctcaccggagatatcactgctacaagctgaataagcatattcactaaaagcttgagaaagattttgaagctcttgttcagaagttgatgattttcca |
48677598 |
T |
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| Q |
157 |
gatttgtgattcttggaagcgagttcaccgagacggaggtcgacgacggaatcggtgagattttt |
221 |
Q |
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|||||| |||||||||||| |||| |||||||||||||||| |||||||||||||||| |||| |
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| T |
48677597 |
tatttgttattcttggaagcaagtttgccgagacggaggtcgatgacggaatcggtgagactttt |
48677533 |
T |
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