View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_41 (Length: 230)
Name: NF1449_low_41
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 44827614 - 44827829
Alignment:
| Q |
1 |
aagattctagtaagtgcttgtttgattttttctatatactaattaactaatagggagtgctgttttatttgactgatttttggttcatatatgtagttag |
100 |
Q |
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| T |
44827614 |
aagatactagtaagtgcttgtttgattgtttctatatactaattaactaatagggagtgctgttttatttgactgatttttggttcatatatgtagttag |
44827713 |
T |
|
| Q |
101 |
tttcaatgattccgggatttagttctgagttaataccacaaggccatgaaaatgaaagctcggcaaaacttaagcattatatgacaatgatggattcaat |
200 |
Q |
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| T |
44827714 |
tttcaatgattccgggatttagttctgagttaataccacaaggccatgagaatgaaagctcggcaaaacttaagcattatatgacaatgatggattcaat |
44827813 |
T |
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| Q |
201 |
gacaaatgaaggtatg |
216 |
Q |
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|||||||||||||||| |
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| T |
44827814 |
gacaaatgaaggtatg |
44827829 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 2202582 - 2202532
Alignment:
| Q |
162 |
ggcaaaacttaagcattatatgacaatgatggattcaatgacaaatgaagg |
212 |
Q |
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||||||| |||||| ||| |||||||||||||| ||||||||||||||||| |
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| T |
2202582 |
ggcaaaaattaagcgttacatgacaatgatggactcaatgacaaatgaagg |
2202532 |
T |
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